(15 nodes) Linker histone H1/H5, domain H15 network (Arabidopsis thaliana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F4H5.15	Histone H1.1; Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures. (274 aa)
	TRB3	Telomere repeat-binding factor 3; Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. Belongs to the histone H1/H5 family. SMH subfamily. (295 aa)
	HON4	Winged-helix DNA-binding transcription factor family protein. (480 aa)
	TRB2	Telomere repeat-binding factor 2; Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand; Belongs to the histone H1/H5 family. SMH subfamily. (299 aa)
	TRB1	Telomere repeat-binding factor 1; Binds preferentially double-stranded telomeric repeats. (300 aa)
	Q6AWW7_ARATH	Winged-helix DNA-binding transcription factor family protein. (457 aa)
	HON5	High mobility group A5. (479 aa)
	HMGA	HMG-Y-related protein A; Binds A/T-rich DNA with a highly dynamic distribution into the nucleus. (204 aa)
	F20D21.6	Winged-helix DNA-binding transcription factor family protein. (229 aa)
	His1-3	Putative histone H1 protein. (167 aa)
	T06B20.3	Histone H1.2; Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures. (273 aa)
	F28P22.7	Telomere repeat-binding factor 5; Binds preferentially double-stranded telomeric repeats. (287 aa)
	F1L3.23	Telomere repeat-binding factor 4; Binds preferentially double-stranded telomeric repeats. (296 aa)
	F20D21.8	Winged-helix DNA-binding transcription factor family protein. (197 aa)
	F20D21.5	Winged helix-turn-helix transcription repressor DNA-binding protein. (232 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F1L3.23	HMGA	F4I7L1	Q43386	Telomere repeat-binding factor 4; Binds preferentially double-stranded telomeric repeats.	HMG-Y-related protein A; Binds A/T-rich DNA with a highly dynamic distribution into the nucleus.	0.711
F1L3.23	HON4	F4I7L1	Q9LSK7	Telomere repeat-binding factor 4; Binds preferentially double-stranded telomeric repeats.	Winged-helix DNA-binding transcription factor family protein.	0.719
F1L3.23	HON5	F4I7L1	Q4V3D1	Telomere repeat-binding factor 4; Binds preferentially double-stranded telomeric repeats.	High mobility group A5.	0.792
F1L3.23	His1-3	F4I7L1	P94109	Telomere repeat-binding factor 4; Binds preferentially double-stranded telomeric repeats.	Putative histone H1 protein.	0.547
F1L3.23	Q6AWW7_ARATH	F4I7L1	Q6AWW7	Telomere repeat-binding factor 4; Binds preferentially double-stranded telomeric repeats.	Winged-helix DNA-binding transcription factor family protein.	0.805
F20D21.5	F28P22.7	F4HV91	F4IEY4	Winged helix-turn-helix transcription repressor DNA-binding protein.	Telomere repeat-binding factor 5; Binds preferentially double-stranded telomeric repeats.	0.882
F20D21.5	F4H5.15	F4HV91	P26568	Winged helix-turn-helix transcription repressor DNA-binding protein.	Histone H1.1; Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures.	0.793
F20D21.5	HMGA	F4HV91	Q43386	Winged helix-turn-helix transcription repressor DNA-binding protein.	HMG-Y-related protein A; Binds A/T-rich DNA with a highly dynamic distribution into the nucleus.	0.785
F20D21.5	HON4	F4HV91	Q9LSK7	Winged helix-turn-helix transcription repressor DNA-binding protein.	Winged-helix DNA-binding transcription factor family protein.	0.791
F20D21.5	HON5	F4HV91	Q4V3D1	Winged helix-turn-helix transcription repressor DNA-binding protein.	High mobility group A5.	0.824
F20D21.5	His1-3	F4HV91	P94109	Winged helix-turn-helix transcription repressor DNA-binding protein.	Putative histone H1 protein.	0.721
F20D21.5	Q6AWW7_ARATH	F4HV91	Q6AWW7	Winged helix-turn-helix transcription repressor DNA-binding protein.	Winged-helix DNA-binding transcription factor family protein.	0.898
F20D21.5	T06B20.3	F4HV91	P26569	Winged helix-turn-helix transcription repressor DNA-binding protein.	Histone H1.2; Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures.	0.790
F20D21.5	TRB1	F4HV91	Q8VWK4	Winged helix-turn-helix transcription repressor DNA-binding protein.	Telomere repeat-binding factor 1; Binds preferentially double-stranded telomeric repeats.	0.754
F20D21.5	TRB2	F4HV91	Q9FJW5	Winged helix-turn-helix transcription repressor DNA-binding protein.	Telomere repeat-binding factor 2; Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand; Belongs to the histone H1/H5 family. SMH subfamily.	0.793
F20D21.5	TRB3	F4HV91	Q9M2X3	Winged helix-turn-helix transcription repressor DNA-binding protein.	Telomere repeat-binding factor 3; Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. Belongs to the histone H1/H5 family. SMH subfamily.	0.794
F20D21.6	F4H5.15	Q1PFK5	P26568	Winged-helix DNA-binding transcription factor family protein.	Histone H1.1; Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures.	0.793
F20D21.6	HMGA	Q1PFK5	Q43386	Winged-helix DNA-binding transcription factor family protein.	HMG-Y-related protein A; Binds A/T-rich DNA with a highly dynamic distribution into the nucleus.	0.785
F20D21.6	HON4	Q1PFK5	Q9LSK7	Winged-helix DNA-binding transcription factor family protein.	Winged-helix DNA-binding transcription factor family protein.	0.791
F20D21.6	HON5	Q1PFK5	Q4V3D1	Winged-helix DNA-binding transcription factor family protein.	High mobility group A5.	0.841