(28 nodes) Ribosomal protein L2, domain 2 network (Arabidopsis thaliana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ELF5A-1	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis. (158 aa)
	T25K17.120	Elongation factor P (EF-P) family protein. (261 aa)
	RDM3	Protein RNA-directed DNA methylation 3; Effector of RNA-directed DNA methylation (RdDM) triggered by small interfering RNAs (siRNAs, 24-nt RNAs). Functions as an adapter protein that binds scaffold transcripts generated by polymerase V and recruits AGO4 and AGO4-bound siRNAs to form an RdDM effector complex. Promotes the expression of 24-nt RNAs. Required for the initial establishment of DNA methylation. Together with AGO4, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. (1493 aa)
	KLP	KIN17-like protein KLP; May act as repressor of root growth during copper excess and of hypocotyl growth in the dark; Belongs to the KIN17 family. (347 aa)
	F13P17.5	Putative transcription elongation factor SPT5 homolog 2; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity); Belongs to the SPT5 family. (989 aa)
	RPL8A	60S ribosomal protein L8-1. (258 aa)
	RPS4B	40S ribosomal protein S4-2; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
	RPL26A	60S ribosomal protein L26-1; Belongs to the universal ribosomal protein uL24 family. (146 aa)
	rpl2-A	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family. (274 aa)
	RPL24	50S ribosomal protein L24, chloroplastic; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (By similarity). Required for optimal plastid performance in terms of photosynthesis and growth. Required for the translation of plastid mRNAs. Plays a critical role in biosynthesis of thylakoid membrane proteins encoded by chloroplast genes. (198 aa)
	RPL8C	60S ribosomal protein L8-3; Belongs to the universal ribosomal protein uL2 family. (258 aa)
	RPL8B	60S ribosomal protein L8-2; Belongs to the universal ribosomal protein uL2 family. (260 aa)
	RPS4D	40S ribosomal protein S4-3. (262 aa)
	Q8VZU4_ARATH	Ribosomal protein L2 family. (214 aa)
	Q8VZW6_ARATH	Elongation factor P (EF-P) family protein. (236 aa)
	RPS4A	40S ribosomal protein S4-1; Belongs to the eukaryotic ribosomal protein eS4 family. (261 aa)
	ELF5A-2	Eukaryotic translation initiation factor 5A-2; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Regulates cytokinin-mediated root protoxylem specification and represses secifically the expression of AHP6. Regulates the induction of programmed cell death caused by infection with virulent pathogen. (159 aa)
	PTAC13	Plastid transcriptionally active 13. (333 aa)
	ELF5A-3	Eukaryotic translation initiation factor 5A-3; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in supporting growth and plays a regulatory role in the response to sub-lethal osmotic and nutrient stress. (158 aa)
	RPL6C	60S ribosomal protein L6-3; Belongs to the eukaryotic ribosomal protein eL6 family. (233 aa)
	RPL6B	60S ribosomal protein L6-2; Belongs to the eukaryotic ribosomal protein eL6 family. (233 aa)
	RPL26B	60S ribosomal protein L26-2; Belongs to the universal ribosomal protein uL24 family. (146 aa)
	RPL6A	60S ribosomal protein L6-1; Belongs to the eukaryotic ribosomal protein eL6 family. (233 aa)
	Q9LT09_ARATH	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (159 aa)
	RPL14A	60S ribosomal protein L14-1; Belongs to the eukaryotic ribosomal protein eL14 family. (134 aa)
	GTA2	Putative transcription elongation factor SPT5 homolog 1; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity); Belongs to the SPT5 family. (1041 aa)
	RPL14B	60S ribosomal protein L14-2; Belongs to the eukaryotic ribosomal protein eL14 family. (134 aa)
	KIN17	KIN17-like protein; Promotes the copper deficiency response by direct interaction with SPL7. Acts with SPL7 in a common pathway to promote copper- responsive genes and alleviate oxidative stress during copper-limiting periods. May promote SPL7 function when copper is limiting. Participates in the control of general plant growth and development, and in the response to counteract the negative effects of UV radiation. (411 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELF5A-1	Q8VZU4_ARATH	Q9XI91	Q8VZU4	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	Ribosomal protein L2 family.	0.704
ELF5A-1	Q8VZW6_ARATH	Q9XI91	Q8VZW6	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	Elongation factor P (EF-P) family protein.	0.433
ELF5A-1	RPL14A	Q9XI91	Q9SIM4	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	60S ribosomal protein L14-1; Belongs to the eukaryotic ribosomal protein eL14 family.	0.786
ELF5A-1	RPL14B	Q9XI91	Q9T043	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	60S ribosomal protein L14-2; Belongs to the eukaryotic ribosomal protein eL14 family.	0.786
ELF5A-1	RPL24	Q9XI91	P92959	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	50S ribosomal protein L24, chloroplastic; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (By similarity). Required for optimal plastid performance in terms of photosynthesis and growth. Required for the translation of plastid mRNAs. Plays a critical role in biosynthesis of thylakoid membrane proteins encoded by chloroplast genes.	0.817
ELF5A-1	RPL26A	Q9XI91	P51414	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	60S ribosomal protein L26-1; Belongs to the universal ribosomal protein uL24 family.	0.904
ELF5A-1	RPL26B	Q9XI91	Q9FJX2	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	60S ribosomal protein L26-2; Belongs to the universal ribosomal protein uL24 family.	0.904
ELF5A-1	RPL6A	Q9XI91	Q9FZ76	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	60S ribosomal protein L6-1; Belongs to the eukaryotic ribosomal protein eL6 family.	0.860
ELF5A-1	RPL6B	Q9XI91	Q9C9C6	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	60S ribosomal protein L6-2; Belongs to the eukaryotic ribosomal protein eL6 family.	0.860
ELF5A-1	RPL6C	Q9XI91	Q9C9C5	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	60S ribosomal protein L6-3; Belongs to the eukaryotic ribosomal protein eL6 family.	0.860
ELF5A-1	RPL8A	Q9XI91	P46286	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	60S ribosomal protein L8-1.	0.844
ELF5A-1	RPL8B	Q9XI91	Q4PSL7	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	60S ribosomal protein L8-2; Belongs to the universal ribosomal protein uL2 family.	0.844
ELF5A-1	RPL8C	Q9XI91	Q42064	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	60S ribosomal protein L8-3; Belongs to the universal ribosomal protein uL2 family.	0.844
ELF5A-1	RPS4A	Q9XI91	Q93VH9	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	40S ribosomal protein S4-1; Belongs to the eukaryotic ribosomal protein eS4 family.	0.786
ELF5A-1	RPS4B	Q9XI91	P49204	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	40S ribosomal protein S4-2; Belongs to the eukaryotic ribosomal protein eS4 family.	0.786
ELF5A-1	RPS4D	Q9XI91	Q8VYK6	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	40S ribosomal protein S4-3.	0.786
ELF5A-1	rpl2-A	Q9XI91	P56791	Eukaryotic translation initiation factor 5A-1; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Involved in xylogenesis.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.704
ELF5A-2	Q8VZU4_ARATH	Q93VP3	Q8VZU4	Eukaryotic translation initiation factor 5A-2; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Regulates cytokinin-mediated root protoxylem specification and represses secifically the expression of AHP6. Regulates the induction of programmed cell death caused by infection with virulent pathogen.	Ribosomal protein L2 family.	0.710
ELF5A-2	RPL14A	Q93VP3	Q9SIM4	Eukaryotic translation initiation factor 5A-2; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Regulates cytokinin-mediated root protoxylem specification and represses secifically the expression of AHP6. Regulates the induction of programmed cell death caused by infection with virulent pathogen.	60S ribosomal protein L14-1; Belongs to the eukaryotic ribosomal protein eL14 family.	0.807
ELF5A-2	RPL14B	Q93VP3	Q9T043	Eukaryotic translation initiation factor 5A-2; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Regulates cytokinin-mediated root protoxylem specification and represses secifically the expression of AHP6. Regulates the induction of programmed cell death caused by infection with virulent pathogen.	60S ribosomal protein L14-2; Belongs to the eukaryotic ribosomal protein eL14 family.	0.845