(4 nodes) HMGB9-like, ARID/BRIGHT DNA binding domain network (Arabidopsis thaliana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HMGB15	High mobility group B protein 15; Binds preferentially DNA with A/T-rich content. Belongs to the HMGB family. (448 aa)
	HMGB11	Putative high mobility group B protein 11; Binds preferentially DNA with A/T-rich content. (337 aa)
	HMGB9	High mobility group B protein 9; Binds preferentially DNA with A/T-rich content. Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus. (338 aa)
	HMGB10	High mobility group B protein 10; Binds preferentially DNA with A/T-rich content. (319 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HMGB10	HMGB11	Q9LTT3	Q9LG02	High mobility group B protein 10; Binds preferentially DNA with A/T-rich content.	Putative high mobility group B protein 11; Binds preferentially DNA with A/T-rich content.	0.706
HMGB10	HMGB15	Q9LTT3	Q9MAT6	High mobility group B protein 10; Binds preferentially DNA with A/T-rich content.	High mobility group B protein 15; Binds preferentially DNA with A/T-rich content. Belongs to the HMGB family.	0.693
HMGB10	HMGB9	Q9LTT3	Q9SGS2	High mobility group B protein 10; Binds preferentially DNA with A/T-rich content.	High mobility group B protein 9; Binds preferentially DNA with A/T-rich content. Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus.	0.704
HMGB11	HMGB10	Q9LG02	Q9LTT3	Putative high mobility group B protein 11; Binds preferentially DNA with A/T-rich content.	High mobility group B protein 10; Binds preferentially DNA with A/T-rich content.	0.706
HMGB11	HMGB15	Q9LG02	Q9MAT6	Putative high mobility group B protein 11; Binds preferentially DNA with A/T-rich content.	High mobility group B protein 15; Binds preferentially DNA with A/T-rich content. Belongs to the HMGB family.	0.667
HMGB11	HMGB9	Q9LG02	Q9SGS2	Putative high mobility group B protein 11; Binds preferentially DNA with A/T-rich content.	High mobility group B protein 9; Binds preferentially DNA with A/T-rich content. Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus.	0.732
HMGB15	HMGB10	Q9MAT6	Q9LTT3	High mobility group B protein 15; Binds preferentially DNA with A/T-rich content. Belongs to the HMGB family.	High mobility group B protein 10; Binds preferentially DNA with A/T-rich content.	0.693
HMGB15	HMGB11	Q9MAT6	Q9LG02	High mobility group B protein 15; Binds preferentially DNA with A/T-rich content. Belongs to the HMGB family.	Putative high mobility group B protein 11; Binds preferentially DNA with A/T-rich content.	0.667
HMGB15	HMGB9	Q9MAT6	Q9SGS2	High mobility group B protein 15; Binds preferentially DNA with A/T-rich content. Belongs to the HMGB family.	High mobility group B protein 9; Binds preferentially DNA with A/T-rich content. Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus.	0.694
HMGB9	HMGB10	Q9SGS2	Q9LTT3	High mobility group B protein 9; Binds preferentially DNA with A/T-rich content. Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus.	High mobility group B protein 10; Binds preferentially DNA with A/T-rich content.	0.704
HMGB9	HMGB11	Q9SGS2	Q9LG02	High mobility group B protein 9; Binds preferentially DNA with A/T-rich content. Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus.	Putative high mobility group B protein 11; Binds preferentially DNA with A/T-rich content.	0.732
HMGB9	HMGB15	Q9SGS2	Q9MAT6	High mobility group B protein 9; Binds preferentially DNA with A/T-rich content. Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus.	High mobility group B protein 15; Binds preferentially DNA with A/T-rich content. Belongs to the HMGB family.	0.694