STRINGSTRING
SEC16B SEC16B YKT61 YKT61 F10A12.14 F10A12.14 HBI1 HBI1 F16J13.160 F16J13.160 F11M15.2 F11M15.2 FYPP1 FYPP1 SEC13A SEC13A ASNAP2 ASNAP2 GSNAP GSNAP T2J13.220 T2J13.220 SLY1 SLY1 F5H14.10 F5H14.10 MEMB11 MEMB11 F2G1.10 F2G1.10 ERMO2 ERMO2 T20K12.160 T20K12.160 CEF CEF NSF NSF F4D11.160 F4D11.160 T1E22.40 T1E22.40 ASNAP1 ASNAP1 F7K15_80 F7K15_80 YKT62 YKT62 SYP32 SYP32 FYPP3 FYPP3 TRS120 TRS120 MEMB12 MEMB12 K21L19.2 K21L19.2 MFB16.9 MFB16.9 MAG5 MAG5 SYP31 SYP31 REM1.4 REM1.4 T9J14.5 T9J14.5 F28J15.3 F28J15.3 SYP24 SYP24 SEC22 SEC22 SPX4 SPX4 F7H19.170 F7H19.170 BEE2 BEE2 Q8VYP7_ARATH Q8VYP7_ARATH SPX1 SPX1 T6D22.8 T6D22.8 SEC31B SEC31B T25N20.17 T25N20.17 PHF1 PHF1 BHLH63 BHLH63 F16P17.3 F16P17.3 F12A21.19 F12A21.19 F1N18.15 F1N18.15 T7B11.7 T7B11.7 MQO24.2 MQO24.2 F5O11.11 F5O11.11 F6N23.13 F6N23.13 SPX3 SPX3 F5O11.7 F5O11.7 T14P4.21 T14P4.21 SYP21 SYP21 STL2P STL2P Q1G325_ARATH Q1G325_ARATH SAR1B SAR1B SYP22 SYP22 F28M20.70 F28M20.70 DBP DBP ATSAR1 ATSAR1 SEC13B SEC13B SPX2 SPX2 PRD1 PRD1 SAR1A SAR1A SYP23 SYP23 MBG8.1 MBG8.1 TRS130 TRS130 Dl3120W Dl3120W F25I24.180 F25I24.180 F4J5I0_ARATH F4J5I0_ARATH F4J462_ARATH F4J462_ARATH T1B3.12 T1B3.12 SEC31A SEC31A F26G16.8 F26G16.8 T21F11.17 T21F11.17 GC6 GC6 F17P19.17 F17P19.17
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SEC16BProtein transport protein SEC16B homolog; Required for protein transport from the endoplasmic reticulum to the Golgi apparatus. (1361 aa)
YKT61VAMP-like protein YKT61; May be involved in the secretory pathway. (199 aa)
F10A12.14Sec23/sec24 transport family protein. (745 aa)
HBI1Transcription factor HBI1; Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. (337 aa)
F16J13.160Protein cornichon homolog 5. (135 aa)
F11M15.2Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (169 aa)
FYPP1Phytochrome-associated serine/threonine-protein phosphatase 1; Dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms. Plays a major role in the photoperiodic control of flowering time in long days by modulating phytochrome signals in flowering time control (By similarity). (303 aa)
SEC13AProtein transport protein SEC13 homolog A; Required for protein transport from the endoplasmic reticulum to the Golgi apparatus. (302 aa)
ASNAP2Alpha-soluble NSF attachment protein 2; Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Binds to SNARE complex and then recruits NSF to disassemble it (By similarity); Belongs to the SNAP family. (289 aa)
GSNAPGamma-soluble NSF attachment protein; Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Binds to SNARE complex and then recruits NSF to disassemble it (By similarity); Belongs to the SNAP family. (291 aa)
T2J13.220Remorin family protein. (175 aa)
SLY1SEC1 family transport protein SLY1; May be involved in the early secretory pathway. (627 aa)
F5H14.10SNARE-like superfamily protein. (140 aa)
MEMB11Membrin-11; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (225 aa)
F2G1.10Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (761 aa)
ERMO2Protein transport protein Sec24-like At3g07100; Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex (By similarity); Belongs to the SEC23/SEC24 family. SEC24 subfamily. (1038 aa)
T20K12.160Uncharacterized protein At3g61260. (212 aa)
CEFProtein transport protein Sec24-like CEF; Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex (By similarity). (1096 aa)
NSFVesicle-fusing ATPase; Involved in vesicle-mediated transport. The ATPase activity of NSF serves to disassemble the SNARE complex, freeing the components for subsequent pairing and fusion events. (742 aa)
F4D11.160Protein transport protein Sec24-like At4g32640; Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex (By similarity); Belongs to the SEC23/SEC24 family. SEC24 subfamily. (1080 aa)
T1E22.40Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (141 aa)
ASNAP1Alpha-soluble NSF attachment protein 1; Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Binds to SNARE complex and then recruits NSF to disassemble it (By similarity). (381 aa)
F7K15_80RING/FYVE/PHD-type zinc finger family protein. (485 aa)
YKT62VAMP-like protein YKT62; May be involved in the secretory pathway; Belongs to the synaptobrevin family. (199 aa)
SYP32Syntaxin-32; Vesicle trafficking protein that functions in the secretory pathway; Belongs to the syntaxin family. (347 aa)
FYPP3Phytochrome-associated serine/threonine-protein phosphatase 3; Dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms. Plays a major role in the photoperiodic control of flowering time in long days by modulating phytochrome signals in flowering time control. (303 aa)
TRS120Trafficking protein particle complex II-specific subunit 120 homolog; Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells. Required for the polarized and selective transport of PIN2 and probably PIN1 to the plasma membrane. Not required for ER-to-Golgi as well as biosynthetic and endocytic vacuolar transport. (1186 aa)
MEMB12Membrin-12; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network; Belongs to the GOSR2 family. (219 aa)
K21L19.2Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily. (195 aa)
MFB16.9Transducin/WD40 repeat-like superfamily protein. (383 aa)
MAG5Protein transport protein SEC16A homolog; Required for efficient protein export from the endoplasmic reticulum (ER) to the Golgi by regulating COPII coat dynamics at the ER. Functions as a scaffold and regulator of COPII coat assembly at ER exit sites; Belongs to the SEC16 family. (1350 aa)
SYP31Syntaxin-31; Vesicle trafficking protein that functions in the secretory pathway; Belongs to the syntaxin family. (336 aa)
REM1.4Remorin 1.4; Belongs to the remorin family. (202 aa)
T9J14.5Transport protein particle (TRAPP) component. (173 aa)
F28J15.3Protein cornichon homolog 1. (146 aa)
SYP24Putative syntaxin-24; Vesicle trafficking protein that functions in the secretory pathway; Belongs to the syntaxin family. (416 aa)
SEC2225.3 kDa vesicle transport protein; V-SNARE involved in vesicle trafficking from the ER to the Golgi complex; Belongs to the synaptobrevin family. (218 aa)
SPX4SPX domain-containing protein 4. (318 aa)
F7H19.170SPX domain-containing membrane protein At4g22990; Belongs to the major facilitator superfamily. (699 aa)
BEE2Transcription factor BEE 2; Positive regulator of brassinosteroid signaling. (304 aa)
Q8VYP7_ARATHRas-related small GTP-binding family protein; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
SPX1SPX domain-containing protein 1; Plays a positive role in plant adaptation to phosphate starvation. Inhibits PHR1 DNA-binding activity in a Pi-dependent manner. (256 aa)
T6D22.8SIT4 phosphatase-associated family protein. (802 aa)
SEC31BProtein transport protein SEC31 homolog B; Required for protein transport from the endoplasmic reticulum to the Golgi apparatus; Belongs to the WD repeat SEC31 family. (1104 aa)
T25N20.17Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (783 aa)
PHF1SEC12-like protein 1; Involved in Pi uptake by facilitating the trafficking of PHT1-1/PHT1;1 from the endoplasmic reticulum to the plasma membrane. (398 aa)
BHLH63Transcription factor bHLH63; Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. (335 aa)
F16P17.3Protein cornichon homolog 3; Belongs to the cornichon family. (137 aa)
F12A21.19Restriction endonuclease, type II-like superfamily protein. (355 aa)
F1N18.15RING/FYVE/PHD-type zinc finger family protein. (510 aa)
T7B11.7Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (880 aa)
MQO24.2Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (794 aa)
F5O11.11Protein cornichon homolog 4; Belongs to the cornichon family. (137 aa)
F6N23.13Remorin family protein. (123 aa)
SPX3SPX domain-containing protein 3; Plays a positive role in plant adaptation to phosphate starvation and exerts negative feedback regulation of SPX1. (245 aa)
F5O11.7Probable protein cornichon homolog 2. (129 aa)
T14P4.21Ras-related small GTP-binding family protein. (122 aa)
SYP21Syntaxin-21; May function in the docking or fusion of transport vesicles with the prevacuolar membrane. (279 aa)
STL2PSEC12-like protein 2; Required for the formation or budding of transport vesicles from the ER. (393 aa)
Q1G325_ARATHSerine/threonine-protein phosphatase 6 regulatory subunit. (55 aa)
SAR1BGTP-binding protein SAR1B; Involved in transport from the endoplasmic reticulum to the Golgi apparatus. (193 aa)
SYP22Syntaxin-22; May provide the t-SNARE function in the vacuolar assembly. Promotes the formation of vacuolar membrane 'bulbs'. Required for inflorescence stem gravitropism; Belongs to the syntaxin family. (268 aa)
F28M20.70Sec1/munc18-like (SM) proteins superfamily; Belongs to the STXBP/unc-18/SEC1 family. (171 aa)
DBPRemorin; Exhibits a non sequence-specific DNA-binding activity. (190 aa)
ATSAR1Secretion-associated RAS super family 1; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
SEC13BProtein transport protein SEC13 homolog B; Required for protein transport from the endoplasmic reticulum to the Golgi apparatus. (302 aa)
SPX2SPX domain-containing protein 2; May inhibit PHR1 DNA-binding activity in a Pi-dependent manner. (287 aa)
PRD1Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1; Involved in DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination. (1330 aa)
SAR1AGTP-binding protein SAR1A; Involved in transport from the endoplasmic reticulum to the Golgi apparatus; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
SYP23Syntaxin-23; May function in the docking or fusion of transport vesicles with the prevacuolar membrane. (255 aa)
MBG8.1Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (199 aa)
TRS130Trafficking protein particle complex II-specific subunit 130 homolog; Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells. Required for the polarized and selective transport of PIN2, but not PIN1, to the plasma membrane. Not required for ER-to-Golgi as well as biosynthetic and endocytic vacuolar transport. Belongs to the TMEM1 family. (1259 aa)
Dl3120WProtein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (773 aa)
F25I24.180Ribosome maturation factor. (281 aa)
F4J5I0_ARATHSIT4 phosphatase-associated family protein. (789 aa)
F4J462_ARATHProtein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (791 aa)
T1B3.12SIT4 phosphatase-associated family protein. (788 aa)
SEC31AProtein transport protein SEC31 homolog A; Required for protein transport from the endoplasmic reticulum to the Golgi apparatus. (969 aa)
F26G16.8SIT4 phosphatase-associated family protein. (811 aa)
T21F11.17SNARE-like superfamily protein. (135 aa)
GC6Golgin candidate 6; Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus. Functions in the anterograde transport of storage protein precursors from the endoplasmic reticulum (ER) to the Golgi complex. (914 aa)
F17P19.17SNARE-like superfamily protein; Belongs to the synaptobrevin family. (227 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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