(10 nodes) SWIB/MDM2 domain network (Arabidopsis thaliana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K19M13.11	SWIB/MDM2, Plus-3 and GYF domain-containing protein. (449 aa)
	F1C9.33	SWIB/MDM2 domain superfamily protein. (458 aa)
	T27K22.4	annotation not available (824 aa)
	CHC1-2	SWI/SNF complex component SNF12 homolog; Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology); Belongs to the SMARCD family. (534 aa)
	F8L15_160	Uncharacterized protein At5g08430. (553 aa)
	F24M12.160	Zinc finger CCCH domain-containing protein 44. (1292 aa)
	NERD	Zinc finger CCCH domain-containing protein 19; Plays a central role in integrating RNA silencing and chromatin signals in 21 nt siRNA-dependent DNA methylation on cytosine pathway leading to transcriptional gene silencing of specific sequences. Involved in a chromatin-based RNA silencing pathway that encompasses both post-transcriptional gene silencing (PTGS) (e.g. RDR1, RDR6 and AGO2) and transcriptional gene silencing (TGS) (e.g. siRNA- dependent DNA methylation and histone H3) components. Mediates siRNA accumulation at specific chromatin loci. Binds H3K4me0 through its PHD to enforc [...] (1773 aa)
	F10M23.150	SWIB/MDM2 domain superfamily protein. (106 aa)
	F4JF32_ARATH	SWIB complex BAF60b domain-containing protein. (228 aa)
	MBK5.18	Zinc ion binding / DNA binding protein. (602 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHC1-2	F1C9.33	Q9FMT4	Q147F4	SWI/SNF complex component SNF12 homolog; Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology); Belongs to the SMARCD family.	SWIB/MDM2 domain superfamily protein.	0.574
CHC1-2	F8L15_160	Q9FMT4	Q9FT92	SWI/SNF complex component SNF12 homolog; Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology); Belongs to the SMARCD family.	Uncharacterized protein At5g08430.	0.810
F1C9.33	CHC1-2	Q147F4	Q9FMT4	SWIB/MDM2 domain superfamily protein.	SWI/SNF complex component SNF12 homolog; Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology); Belongs to the SMARCD family.	0.574
F4JF32_ARATH	F8L15_160	F4JF32	Q9FT92	SWIB complex BAF60b domain-containing protein.	Uncharacterized protein At5g08430.	0.739
F8L15_160	CHC1-2	Q9FT92	Q9FMT4	Uncharacterized protein At5g08430.	SWI/SNF complex component SNF12 homolog; Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology); Belongs to the SMARCD family.	0.810
F8L15_160	F4JF32_ARATH	Q9FT92	F4JF32	Uncharacterized protein At5g08430.	SWIB complex BAF60b domain-containing protein.	0.739