STRINGSTRING
F9N12.7 F9N12.7 F2J10.3 F2J10.3 F9N12.6 F9N12.6 F2K11.2 F2K11.2 PTD PTD PCMP-E10 PCMP-E10 PBE1 PBE1 GGB GGB RPF1 RPF1 F9N12.15 F9N12.15 F5O11.4 F5O11.4 COIL COIL APG3 APG3 F13K23.5 F13K23.5 T12C24.15 T12C24.15 F9N12.5 F9N12.5 F16M19.13 F16M19.13 F16M19.5 F16M19.5 F16M19.17 F16M19.17 F16M19.15 F16M19.15 EMB175 EMB175 T12C24.29 T12C24.29 AFB3 AFB3 F13K23.2 F13K23.2 EIF4B2 EIF4B2 F3F19.6 F3F19.6 F3F19.7 F3F19.7 F2K11.22 F2K11.22
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
F9N12.7Uncharacterized protein At1g63310/F9N12_7. (154 aa)
F2J10.3Immunoglobulin. (562 aa)
F9N12.6Pentatricopeptide repeat (PPR) superfamily protein. (189 aa)
F2K11.2Tetratricopeptide repeat (TPR)-like superfamily protein. (273 aa)
PTDProtein PARTING DANCERS; Required for chromosome segregation during meiosis. During diakinesis and prometaphase I, essential for the formation of class I meiotic crossovers and homologous recombination. Belongs to the ERCC1/RAD10/SWI10 family. (250 aa)
PCMP-E10Pentatricopeptide repeat-containing protein At1g62260, mitochondrial. (656 aa)
PBE1Proteasome subunit beta type-5-A; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity; Belongs to the peptidase T1B family. (274 aa)
GGBGeranylgeranyl transferase type-1 subunit beta; Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of proteins having the C-terminal sequence Cys- aliphatic-aliphatic-X (CaaX). Seems to exclusively prenylate CaaX substrates with leucine in the terminal position. The beta subunit is responsible for peptide-binding. May negatively regulate abscisic acid (ABA) signaling in guard cells and auxin-induced lateral root initiation. (375 aa)
RPF1Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial. (602 aa)
F9N12.15Tetratricopeptide repeat (TPR)-like superfamily protein. (323 aa)
F5O11.4Pentatricopeptide repeat-containing protein At1g12300, mitochondrial. (637 aa)
COILCoilin; Probable component of nuclear coiled bodies, also known as Cajal bodies or CBs, which are involved in the modification and assembly of nucleoplasmic snRNPs (Probable). Required for CBs formation. Binds snRNAs and non-specific artificial RNA via the N-terminal part of the NOD domain and via the NLS2 region (212-282) of the IDD domain. The two sites are able to function independently and provide effective RNA-binding in a non-cooperative manner. (608 aa)
APG3Peptide chain release factor APG3, chloroplastic; May direct the termination of translation in response to the peptide chain termination codon UAG. Required for normal chloroplast development and plays essential roles in the termination of translation in plastids. (422 aa)
F13K23.5Nucleic acid-binding, OB-fold-like protein. (767 aa)
T12C24.15Pentatricopeptide repeat-containing protein At1g12620; Belongs to the PPR family. P subfamily. (621 aa)
F9N12.5Pentatricopeptide repeat-containing protein At1g63330; Belongs to the PPR family. P subfamily. (559 aa)
F16M19.13Pentatricopeptide repeat-containing protein At1g63150; Belongs to the PPR family. P subfamily. (629 aa)
F16M19.5Pentatricopeptide repeat-containing protein At1g63130, mitochondrial. (630 aa)
F16M19.17Pentatricopeptide repeat-containing protein At1g63080, mitochondrial. (614 aa)
F16M19.15Pentatricopeptide repeat-containing protein At1g63070, mitochondrial. (590 aa)
EMB175Pentatricopeptide repeat-containing protein At5g03800; May play a role in embryogenesis. (896 aa)
T12C24.29E3 ubiquitin-protein ligase At1g12760; Mediates E2-dependent protein ubiquitination in vitro. (408 aa)
AFB3Protein AUXIN SIGNALING F-BOX 3; Confers sensitivity to the virulent bacterial pathogen P.syringae (By similarity). Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin- regulated transcription. Involved in embryogenesis regulation by auxin. (577 aa)
F13K23.2Pentatricopeptide repeat-containing protein At1g12775, mitochondrial. (644 aa)
EIF4B2Eukaryotic translation initiation factor 4B2; Promotes the eIF4F and eIF4A RNA-dependent ATP-hydrolysis activity with different efficiency depending on mRNAs, thus providing mRNA discrimination during initiation of translation. (549 aa)
F3F19.6Pentatricopeptide repeat-containing protein At1g13040, mitochondrial. (517 aa)
F3F19.7Proline-rich receptor-like kinase. (317 aa)
F2K11.22Pentatricopeptide repeat-containing protein At1g63400; Belongs to the PPR family. P subfamily. (577 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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