9 items (Arabidopsis thaliana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T23E18.8	Prolyl oligopeptidase family protein. (795 aa)
	F4JBL2_ARATH	Alpha/beta-Hydrolases superfamily protein. (318 aa)
	PYR4	Dihydroorotase, mitochondrial; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class II DHOase subfamily. (377 aa)
	CTIMC	Triosephosphate isomerase, cytosolic; Belongs to the triosephosphate isomerase family. (254 aa)
	PIP	Proline iminopeptidase; Specifically catalyzes the removal of N-terminal proline residues from peptides; Belongs to the peptidase S33 family. (380 aa)
	DER1	Derlin-1; May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (266 aa)
	TIM	Triosephosphate isomerase, chloroplastic; Belongs to the triosephosphate isomerase family. (315 aa)
	AARE	Acylamino-acid-releasing enzyme; Catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Can degrade the glycated RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) protein but not the native protein. May be involved in the elimination of glycated proteins. Plays a homeostatic role in sustaining the cytoplasmic antioxidative system. May contribute to the elimination of the oxidized proteins in the cytoplasm. (764 aa)
	F14O10.2	Prolyl oligopeptidase family protein. (731 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AARE	F14O10.2	Q84LM4	F4HSS5	Acylamino-acid-releasing enzyme; Catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Can degrade the glycated RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) protein but not the native protein. May be involved in the elimination of glycated proteins. Plays a homeostatic role in sustaining the cytoplasmic antioxidative system. May contribute to the elimination of the oxidized proteins in the cytoplasm.	Prolyl oligopeptidase family protein.	0.899
AARE	F4JBL2_ARATH	Q84LM4	F4JBL2	Acylamino-acid-releasing enzyme; Catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Can degrade the glycated RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) protein but not the native protein. May be involved in the elimination of glycated proteins. Plays a homeostatic role in sustaining the cytoplasmic antioxidative system. May contribute to the elimination of the oxidized proteins in the cytoplasm.	Alpha/beta-Hydrolases superfamily protein.	0.743
AARE	T23E18.8	Q84LM4	F4I2A0	Acylamino-acid-releasing enzyme; Catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Can degrade the glycated RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) protein but not the native protein. May be involved in the elimination of glycated proteins. Plays a homeostatic role in sustaining the cytoplasmic antioxidative system. May contribute to the elimination of the oxidized proteins in the cytoplasm.	Prolyl oligopeptidase family protein.	0.913
CTIMC	TIM	P48491	Q9SKP6	Triosephosphate isomerase, cytosolic; Belongs to the triosephosphate isomerase family.	Triosephosphate isomerase, chloroplastic; Belongs to the triosephosphate isomerase family.	0.953
DER1	F4JBL2_ARATH	Q8VZU9	F4JBL2	Derlin-1; May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Alpha/beta-Hydrolases superfamily protein.	0.697
F14O10.2	AARE	F4HSS5	Q84LM4	Prolyl oligopeptidase family protein.	Acylamino-acid-releasing enzyme; Catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Can degrade the glycated RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) protein but not the native protein. May be involved in the elimination of glycated proteins. Plays a homeostatic role in sustaining the cytoplasmic antioxidative system. May contribute to the elimination of the oxidized proteins in the cytoplasm.	0.899
F14O10.2	F4JBL2_ARATH	F4HSS5	F4JBL2	Prolyl oligopeptidase family protein.	Alpha/beta-Hydrolases superfamily protein.	0.788
F4JBL2_ARATH	AARE	F4JBL2	Q84LM4	Alpha/beta-Hydrolases superfamily protein.	Acylamino-acid-releasing enzyme; Catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Can degrade the glycated RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) protein but not the native protein. May be involved in the elimination of glycated proteins. Plays a homeostatic role in sustaining the cytoplasmic antioxidative system. May contribute to the elimination of the oxidized proteins in the cytoplasm.	0.743
F4JBL2_ARATH	DER1	F4JBL2	Q8VZU9	Alpha/beta-Hydrolases superfamily protein.	Derlin-1; May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.697
F4JBL2_ARATH	F14O10.2	F4JBL2	F4HSS5	Alpha/beta-Hydrolases superfamily protein.	Prolyl oligopeptidase family protein.	0.788
F4JBL2_ARATH	PIP	F4JBL2	P93732	Alpha/beta-Hydrolases superfamily protein.	Proline iminopeptidase; Specifically catalyzes the removal of N-terminal proline residues from peptides; Belongs to the peptidase S33 family.	0.542
F4JBL2_ARATH	PYR4	F4JBL2	O04904	Alpha/beta-Hydrolases superfamily protein.	Dihydroorotase, mitochondrial; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class II DHOase subfamily.	0.785
F4JBL2_ARATH	T23E18.8	F4JBL2	F4I2A0	Alpha/beta-Hydrolases superfamily protein.	Prolyl oligopeptidase family protein.	0.788
PIP	F4JBL2_ARATH	P93732	F4JBL2	Proline iminopeptidase; Specifically catalyzes the removal of N-terminal proline residues from peptides; Belongs to the peptidase S33 family.	Alpha/beta-Hydrolases superfamily protein.	0.542
PYR4	F4JBL2_ARATH	O04904	F4JBL2	Dihydroorotase, mitochondrial; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class II DHOase subfamily.	Alpha/beta-Hydrolases superfamily protein.	0.785
T23E18.8	AARE	F4I2A0	Q84LM4	Prolyl oligopeptidase family protein.	Acylamino-acid-releasing enzyme; Catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Can degrade the glycated RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) protein but not the native protein. May be involved in the elimination of glycated proteins. Plays a homeostatic role in sustaining the cytoplasmic antioxidative system. May contribute to the elimination of the oxidized proteins in the cytoplasm.	0.913
T23E18.8	F4JBL2_ARATH	F4I2A0	F4JBL2	Prolyl oligopeptidase family protein.	Alpha/beta-Hydrolases superfamily protein.	0.788
TIM	CTIMC	Q9SKP6	P48491	Triosephosphate isomerase, chloroplastic; Belongs to the triosephosphate isomerase family.	Triosephosphate isomerase, cytosolic; Belongs to the triosephosphate isomerase family.	0.953