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ycf3 ycf3 ND1 ND1 NAD7 NAD7 PCMP-E9 PCMP-E9 F21M12.38 F21M12.38 PRORP1 PRORP1 PRORP2 PRORP2 PCMP-H82 PCMP-H82 PPR336 PPR336 ATC401 ATC401 TCP8 TCP8 PCMP-E69 PCMP-E69 EMB175 EMB175 PCMP-H88 PCMP-H88 PCMP-E103 PCMP-E103 PNM1 PNM1 MUA22.8 MUA22.8 DYW7 DYW7 K3M16.80 K3M16.80 F9P14.13 F9P14.13 PCMP-H52-2 PCMP-H52-2 PCMP-H57 PCMP-H57 T4D2.100 T4D2.100 HCF152 HCF152 F22C12.14 F22C12.14 F12K11.8 F12K11.8 F2H17.15 F2H17.15 LPE1 LPE1 PCMP-E87 PCMP-E87 GRP23-2 GRP23-2 OTP51 OTP51 ABO5 ABO5 F3G5.2 F3G5.2 F24D13.16 F24D13.16 nad1 nad1 nad5 nad5 nad7 nad7 PRORP3 PRORP3 CRR4 CRR4 F7J7.110 F7J7.110 LOJ LOJ EMB1444 EMB1444 PCMP-H86 PCMP-H86 ndhD ndhD ND5 ND5
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
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ycf3Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits. (168 aa)
ND1NADH-ubiquinone oxidoreductase chain 1; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). (325 aa)
NAD7NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). Component of the iron-sulfur (IP) fragment of the enzyme. (394 aa)
PCMP-E9Pentatricopeptide repeat-containing protein At2g44880; Belongs to the PPR family. PCMP-E subfamily. (555 aa)
F21M12.38Pentatricopeptide repeat-containing protein At1g09900; Belongs to the PPR family. P subfamily. (598 aa)
PRORP1Proteinaceous RNase P 1, chloroplastic/mitochondrial; Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Preferentially cleaves at the unusual cleavage site, but also able to cleave at the classical cleavage site. Also involved in the maturation of mRNAs in mitochondria. (572 aa)
PRORP2Proteinaceous RNase P 2; Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Preferentially binds precursor tRNAs containing short 5' leaders and 3' trailers. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA) ; Belongs to the PPR family. P subfamily. (528 aa)
PCMP-H82Pentatricopeptide repeat-containing protein At3g62890; Belongs to the PPR family. PCMP-H subfamily. (573 aa)
PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial; May be involved in translation through its association with polysomes. Could bind RNA; Belongs to the PPR family. P subfamily. (408 aa)
ATC401Pentatricopeptide repeat-containing protein At5g21222; In the C-terminal section; belongs to the PPR family. P subfamily. (831 aa)
TCP8Transcription factor TCP8; Can specifically bind site II elements in the promoter region of PP438/PNM1. (401 aa)
PCMP-E69Pentatricopeptide repeat-containing protein At1g74600, chloroplastic. (895 aa)
EMB175Pentatricopeptide repeat-containing protein At5g03800; May play a role in embryogenesis. (896 aa)
PCMP-H88Pentatricopeptide repeat-containing protein At5g06540; Belongs to the PPR family. PCMP-H subfamily. (622 aa)
PCMP-E103Putative pentatricopeptide repeat-containing protein At5g47460; Belongs to the PPR family. PCMP-E subfamily. (576 aa)
PNM1Pentatricopeptide repeat-containing protein PNM1, mitochondrial; RNA-binding protein that functions in both mitochondrion and nucleus. In mitochondrion, it is associated with polysomes and may play a role in translation. Required during embryogenesis. In nucleus, might be involved in the regulation of its own gene expression. Belongs to the PPR family. P subfamily. (521 aa)
MUA22.8Pentatricopeptide repeat-containing protein At5g14080; Belongs to the PPR family. P subfamily. (634 aa)
DYW7Pentatricopeptide repeat-containing protein At1g19720; Belongs to the PPR family. PCMP-H subfamily. (894 aa)
K3M16.80Mediator of RNA polymerase II transcription subunit-like protein. (369 aa)
F9P14.13Pentatricopeptide repeat-containing protein At1g06270; Belongs to the PPR family. P subfamily. (343 aa)
PCMP-H52-2Putative pentatricopeptide repeat-containing protein At5g52630; Belongs to the PPR family. PCMP-H subfamily. (588 aa)
PCMP-H57Pentatricopeptide repeat-containing protein At3g14330; Belongs to the PPR family. PCMP-H subfamily. (710 aa)
T4D2.100Pentatricopeptide repeat-containing protein At3g53170; Belongs to the PPR family. P subfamily. (447 aa)
HCF152Pentatricopeptide repeat-containing protein At3g09650, chloroplastic; Involved in the processing of polycistronic chloroplast psbB- psbT-psbH-petB-petD transcript. Could bind RNA. Belongs to the PPR family. P subfamily. (778 aa)
F22C12.14Pentatricopeptide repeat-containing protein At1g64100; Belongs to the PPR family. P subfamily. (666 aa)
F12K11.8Pentatricopeptide repeat-containing protein At1g06580; Belongs to the PPR family. P subfamily. (500 aa)
F2H17.15Pentatricopeptide repeat-containing protein At2g36240; Belongs to the PPR family. P subfamily. (497 aa)
LPE1Protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic; Required for light-regulated photosystem II (PSII) biogenesis and grana thylakoids formation by binding to the 5' UTR of PSII subunit mRNAs (e.g. psbJ, psbN and psbA) in a light-dependent manner through a redox-based mechanism, and facilitating the association of HCF173 with target mRNAs, which encodes PSII reaction center proteins (e.g. J, N and D1), thus regulating its expression by modulating ribosome loading. Belongs to the PPR family. P subfamily. (665 aa)
PCMP-E87Putative pentatricopeptide repeat-containing protein At3g01580; Belongs to the PPR family. PCMP-E subfamily. (660 aa)
GRP23-2Pentatricopeptide repeat-containing protein At1g10270; May function as a transcriptional regulator essential for early embryogenesis. (913 aa)
OTP51Pentatricopeptide repeat-containing protein At2g15820, chloroplastic; Promotes the splicing of group II introns in chloroplasts. Required for the splicing of intron 2 of plastid ycf3 transcripts, a factor required for the assembly of photosystem I (PSI). Involved in the splicing of several other group-IIa introns. May be involved in the splicing of precursor forms of trnL, trnG, trnI, and trnA. Required for the assembly of PSI and PSII. (849 aa)
ABO5Pentatricopeptide repeat-containing protein At1g51965, mitochondrial. (650 aa)
F3G5.2Pentatricopeptide repeat-containing protein At2g37230; Belongs to the PPR family. P subfamily. (757 aa)
F24D13.16Pentatricopeptide repeat-containing protein At2g28050; Belongs to the PPR family. P subfamily. (462 aa)
nad1NADH-ubiquinone oxidoreductase chain 1; Belongs to the complex I subunit 1 family. (325 aa)
nad5NADH-ubiquinone oxidoreductase chain 5; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (669 aa)
nad7NADH dehydrogenase subunit 7; Belongs to the complex I 49 kDa subunit family. (394 aa)
PRORP3Proteinaceous RNase P 3; Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA); Belongs to the PPR family. P subfamily. (576 aa)
CRR4Pentatricopeptide repeat-containing protein At2g45350, chloroplastic; Plays a major role in chloroplast RNA editing. Acts as a site-recognition transacting factor to recruit C-deaminase. Involved in single RNA editing events. Required for the edition of the site 1 of ndhD (ndhD-1 site corresponding to cytidine-2), which is a plastid-encoded subunit of the NADH-plastoquinone oxidoreductase. The interaction with DYW1 is required for its function in editing the ndhD-1 site. Belongs to the PPR family. PCMP-E subfamily. (613 aa)
F7J7.110Pentatricopeptide repeat-containing protein At4g21170; Belongs to the PPR family. P subfamily. (585 aa)
LOJPentatricopeptide repeat-containing protein At2g39230, mitochondrial; Involved in lateral organ development and boundary demarcation. (867 aa)
EMB1444Transcription factor EMB1444; Transcription factor that may regulate root development. (734 aa)
PCMP-H86Putative pentatricopeptide repeat-containing protein At3g15130; Belongs to the PPR family. PCMP-H subfamily. (689 aa)
ndhDNAD(P)H-quinone oxidoreductase chain 4, chloroplastic; Belongs to the complex I subunit 4 family. (500 aa)
ND5NADH-ubiquinone oxidoreductase chain 5; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). (669 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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