7 items (Arabidopsis thaliana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CTIMC	Triosephosphate isomerase, cytosolic; Belongs to the triosephosphate isomerase family. (254 aa)
	EMB3004	Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; In the C-terminal section; belongs to the shikimate dehydrogenase family. (603 aa)
	TIM	Triosephosphate isomerase, chloroplastic; Belongs to the triosephosphate isomerase family. (315 aa)
	GK-2	Guanylate kinase 2; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK1. (389 aa)
	GK3	Guanylate kinase 3, chloroplastic; Essential for recycling GMP and indirectly, cGMP. Belongs to the guanylate kinase family. (282 aa)
	GK-1	Guanylate kinase 1; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK2. (387 aa)
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1072 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTIMC	EMB3004	P48491	Q9SQT8	Triosephosphate isomerase, cytosolic; Belongs to the triosephosphate isomerase family.	Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; In the C-terminal section; belongs to the shikimate dehydrogenase family.	0.431
CTIMC	TIM	P48491	Q9SKP6	Triosephosphate isomerase, cytosolic; Belongs to the triosephosphate isomerase family.	Triosephosphate isomerase, chloroplastic; Belongs to the triosephosphate isomerase family.	0.953
EMB3004	CTIMC	Q9SQT8	P48491	Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; In the C-terminal section; belongs to the shikimate dehydrogenase family.	Triosephosphate isomerase, cytosolic; Belongs to the triosephosphate isomerase family.	0.431
EMB3004	TIM	Q9SQT8	Q9SKP6	Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; In the C-terminal section; belongs to the shikimate dehydrogenase family.	Triosephosphate isomerase, chloroplastic; Belongs to the triosephosphate isomerase family.	0.444
GK-1	GK-2	P93757	Q9M682	Guanylate kinase 1; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK2.	Guanylate kinase 2; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK1.	0.915
GK-1	GK3	P93757	Q94JM2	Guanylate kinase 1; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK2.	Guanylate kinase 3, chloroplastic; Essential for recycling GMP and indirectly, cGMP. Belongs to the guanylate kinase family.	0.914
GK-1	rpoB	P93757	P50546	Guanylate kinase 1; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK2.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.848
GK-2	GK-1	Q9M682	P93757	Guanylate kinase 2; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK1.	Guanylate kinase 1; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK2.	0.915
GK-2	GK3	Q9M682	Q94JM2	Guanylate kinase 2; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK1.	Guanylate kinase 3, chloroplastic; Essential for recycling GMP and indirectly, cGMP. Belongs to the guanylate kinase family.	0.914
GK-2	rpoB	Q9M682	P50546	Guanylate kinase 2; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.849
GK3	GK-1	Q94JM2	P93757	Guanylate kinase 3, chloroplastic; Essential for recycling GMP and indirectly, cGMP. Belongs to the guanylate kinase family.	Guanylate kinase 1; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK2.	0.914
GK3	GK-2	Q94JM2	Q9M682	Guanylate kinase 3, chloroplastic; Essential for recycling GMP and indirectly, cGMP. Belongs to the guanylate kinase family.	Guanylate kinase 2; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK1.	0.914
GK3	rpoB	Q94JM2	P50546	Guanylate kinase 3, chloroplastic; Essential for recycling GMP and indirectly, cGMP. Belongs to the guanylate kinase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.850
TIM	CTIMC	Q9SKP6	P48491	Triosephosphate isomerase, chloroplastic; Belongs to the triosephosphate isomerase family.	Triosephosphate isomerase, cytosolic; Belongs to the triosephosphate isomerase family.	0.953
TIM	EMB3004	Q9SKP6	Q9SQT8	Triosephosphate isomerase, chloroplastic; Belongs to the triosephosphate isomerase family.	Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; In the C-terminal section; belongs to the shikimate dehydrogenase family.	0.444
rpoB	GK-1	P50546	P93757	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Guanylate kinase 1; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK2.	0.848
rpoB	GK-2	P50546	Q9M682	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Guanylate kinase 2; Essential for recycling GMP and indirectly, cGMP. Required for normal development of the gametophyte and embryo, in association with GK1.	0.849
rpoB	GK3	P50546	Q94JM2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Guanylate kinase 3, chloroplastic; Essential for recycling GMP and indirectly, cGMP. Belongs to the guanylate kinase family.	0.850