STRINGSTRING
PAL1 PAL1 F20O9.100 F20O9.100 ATHB-6 ATHB-6 F20O9.90 F20O9.90 TAT3 TAT3 RUB1 RUB1 TAT TAT TAT7 TAT7 F9D16.60 F9D16.60 MYB56 MYB56
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PAL1Phenylalanine ammonia-lyase 1; This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton; Belongs to the PAL/histidase family. (725 aa)
F20O9.100Probable aminotransferase TAT1; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. (449 aa)
ATHB-6Homeobox-leucine zipper protein ATHB-6; Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'- CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway; Belongs to the HD-ZIP homeobox family. Class I subfamily. (311 aa)
F20O9.90Tyrosine transaminase family protein. (447 aa)
TAT3Probable aminotransferase TAT3; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. (445 aa)
RUB1Ubiquitin-NEDD8-like protein RUB1; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved i [...] (156 aa)
TATTyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using L-glutamate in vitro. Can convert phenylalanine to phenylpyruvate and catalyze the reverse reaction in vitro. Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. (420 aa)
TAT7Probable aminotransferase TAT2; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. (414 aa)
F9D16.60Probable aminotransferase TAT4. (424 aa)
MYB56Transcription factor MYB56; Acts as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root. Counteracts brassinosteroid (BR)-mediated cell division in the QC cells. Regulates maternally seed size, especially before the heart stage, promoting both endothelial cells expansion and cell number in the outer integument layer of the seed coat. Modulates the expression of genes involved in cell wall metabolism such as cell division and expansion. Negative regulator of flowering via the repression of FT transcription. (323 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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