(41 nodes) (2023) Genome-Wide Identification of PAP1 Direct Targets in Regulating Seed Anthocyanin Biosynthesis in Arabidopsis. network (Arabidopsis thaliana)

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	ADT6	Arogenate dehydratase/prephenate dehydratase 6, chloroplastic; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine. (413 aa)
	B3H7M7_ARATH	Corepressor. (170 aa)
	F4J479_ARATH	Transferase-like protein. (199 aa)
	ADT4	Arogenate dehydratase 4, chloroplastic; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine. (424 aa)
	CHS	Chalcone synthase; The primary product of this enzyme is 4,2',4',6'- tetrahydroxychalcone (also termed naringenin-chalcone or chalcone) which can under specific conditions spontaneously isomerize into naringenin. (395 aa)
	PHYA	Phytochrome A; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenetic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reduct [...] (1122 aa)
	PAL1	Phenylalanine ammonia-lyase 1; This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton; Belongs to the PAL/histidase family. (725 aa)
	DFRA	Dihydroflavonol 4-reductase; Bifunctional enzyme involved in flavonoid metabolism. (382 aa)
	ACT7	Actin-7; Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the vegetative actins which is involved in the regulation of hormone-induced plant cell proliferation and callus formation. (377 aa)
	CYP73A5	Trans-cinnamate 4-monooxygenase; Controls carbon flux to pigments essential for pollination or UV protection, to numerous pytoalexins synthesized by plants when challenged by pathogens, and to lignins. (505 aa)
	UGT75C1	UDP-glycosyltransferase 75C1; Catalyzes the glycosylation of anthocyanins from UDP-glucose. Belongs to the UDP-glycosyltransferase family. (456 aa)
	MYB6	Transcription repressor MYB6. (236 aa)
	MPK4	Mitogen-activated protein kinase 4; The ANPs-MKK6-MPK4 module is involved in the regulation of plant cytokinesis during meiosis and mitosis. Essential to promote the progression of cytokinesis and for cellularization (formation of the cell plate) during male-specific meiosis. Involved in cortical microtubules organization and stabilization by regulating the phosphorylation state of microtubule-associated proteins such as MAP65- 1. Involved in root hair development process. Negative regulator of systemic acquired resistance (SAR) and salicylic acid- (SA) mediated defense response. Requi [...] (376 aa)
	MYB86	Transcription factor MYB86; Probable transcription factor. (352 aa)
	SPX4	SPX domain-containing protein 4. (318 aa)
	LDOX	Leucoanthocyanidin dioxygenase; Involved in anthocyanin and protoanthocyanidin biosynthesis by catalyzing the oxidation of leucoanthocyanidins into anthocyanidins. Possesses low flavonol synthase activity in vitro towards dihydrokaempferol and dihydroquercetin producing kaempferol and quercitin, respectively. Belongs to the iron/ascorbate-dependent oxidoreductase family. (356 aa)
	MYB75	Transcription factor MYB75; Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of. phenylpropanoid-derived compounds such as anthocyanins and proanthocyanidin, probably together with GL3 and BHLH2. Regulates the expression of CHS, DFRA, LDOX, and BAN. (248 aa)
	GSTF12	Glutathione S-transferase F12; Involved in the transport and/or accumulation of both anthocyanins and proanthocyanidins (PA)s in the vacuole. Functions in the cytosol to maintain the regular accumulation in the vacuole of PA precursors, such as epicatechin and glycosylated epicatechin. (214 aa)
	MYB78	Transcription factor MYB78. (307 aa)
	TT2	Transcription factor TT2; Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). (258 aa)
	ADT5	Arogenate dehydratase 5, chloroplastic; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine. (425 aa)
	MYB114	Transcription factor MYB114; Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. (139 aa)
	MYB113	Transcription factor MYB113; Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. (246 aa)
	TT8	Transcription factor TT8; Transcription activator, when associated with MYB75/PAP1 or MYB90/PAP2. Involved in the control of flavonoid pigmentation. Plays a key role in regulating leucoanthocyanidin reductase (BANYULS) and dihydroflavonol-4-reductase (DFR). Not required for leucoanthocyanidin dioxygenase (LDOX) expression. (518 aa)
	TOZ	Transducin family protein / WD-40 repeat family protein. (876 aa)
	UGT78D2	Flavonol 3-O-glucosyltransferase; Flavonol 3-O-glucosyltransferase that catalyzes the transfer of glucose from UDP-glucose to the 3-OH position of quercetin and kaempferol. Possesses high quercetin 3-O-glucosyltransferase activity in vitro. Catalyzes the glycosylation of anthocyanins from UDP-glucose. Also active in vitro on benzoates and benzoate derivatives. Belongs to the UDP-glycosyltransferase family. (460 aa)
	5MAT	Malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase; Involved in the malonylation of the 5-O-glucose residue of anthocyanin. Acts only on anthocyanin substrates containing a 5-O glucosyl moiety. Not able to catalyze acyl transfer using acetyl-CoA, butyryl-CoA, hexanoyl- CoA, benzoyl-CoA, cinnamoyl-CoA, methylmalonyl- CoA, succinyl-CoA, p-coumaroyl-CoA or caffeoyl-CoA. (449 aa)
	MYB21	Transcription factor MYB21; Transcription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. (226 aa)
	3AT2	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor; Belongs to the plant acyltransferase family. (465 aa)
	A3G2XYLT	Anthocyanidin 3-O-glucoside 2'''-O-xylosyltransferase; Contributes to the last few anthocyanin biosynthetic steps. Converts cyanidin 3-O-glucoside to cyanidin 3-O-xylosyl(1->2)glucoside. Can use 3-O-glucosylated anthocyanidins/flavonols and uridine diphosphate (UDP)-xylose as substrates. (468 aa)
	4CL3	4-coumarate--CoA ligase 3; Produces CoA thioesters of a variety of hydroxy- and methoxy- substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics; Belongs to the ATP-dependent AMP-binding enzyme family. (561 aa)
	F3H	Naringenin,2-oxoglutarate 3-dioxygenase; Catalyzes the 3-beta-hydroxylation of 2S-flavanones to 2R,3R- dihydroflavonols which are intermediates in the biosynthesis of flavonols, anthocyanidins, catechins and proanthocyanidins in plants. (358 aa)
	MYB3	Transcription factor MYB3. (257 aa)
	ADT1	Arogenate dehydratase/prephenate dehydratase 1, chloroplastic; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine. (392 aa)
	CYP75B1	Flavonoid 3'-monooxygenase; Catalyzes the 3'-hydroxylation of the flavonoid B-ring to the 3',4'-hydroxylated state. Convert naringenin to eriodictyol and dihydrokaempferol to dihydroquercetin; Belongs to the cytochrome P450 family. (513 aa)
	MYB4	Transcription repressor MYB4; Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. (282 aa)
	UGT79B2	UDP-glycosyltransferase 79B2; Belongs to the UDP-glycosyltransferase family. (455 aa)
	UGT79B3	UDP-glycosyltransferase 79B3; Belongs to the UDP-glycosyltransferase family. (453 aa)
	TTG1	Protein TRANSPARENT TESTA GLABRA 1; May regulate MYC transcription factors. Involved in epidermal cell fate specification such as trichome and root hair development, seed mucilage production, and anthocyanin biosynthesis by acting at the dihydroflavonol-4-reductase (DFR) step. Together with GL1 and GL3, promotes trichome formation. Activates the transcription of GL2. (341 aa)
	MYB90	Transcription factor MYB90; Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. (249 aa)
	3AT1	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor. (469 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
3AT1	5MAT	Q9ZWB4	Q9LJB4	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor.	Malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase; Involved in the malonylation of the 5-O-glucose residue of anthocyanin. Acts only on anthocyanin substrates containing a 5-O glucosyl moiety. Not able to catalyze acyl transfer using acetyl-CoA, butyryl-CoA, hexanoyl- CoA, benzoyl-CoA, cinnamoyl-CoA, methylmalonyl- CoA, succinyl-CoA, p-coumaroyl-CoA or caffeoyl-CoA.	0.435
3AT1	A3G2XYLT	Q9ZWB4	Q9LVW3	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor.	Anthocyanidin 3-O-glucoside 2'''-O-xylosyltransferase; Contributes to the last few anthocyanin biosynthetic steps. Converts cyanidin 3-O-glucoside to cyanidin 3-O-xylosyl(1->2)glucoside. Can use 3-O-glucosylated anthocyanidins/flavonols and uridine diphosphate (UDP)-xylose as substrates.	0.722
3AT1	CYP75B1	Q9ZWB4	Q9SD85	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor.	Flavonoid 3'-monooxygenase; Catalyzes the 3'-hydroxylation of the flavonoid B-ring to the 3',4'-hydroxylated state. Convert naringenin to eriodictyol and dihydrokaempferol to dihydroquercetin; Belongs to the cytochrome P450 family.	0.540
3AT1	DFRA	Q9ZWB4	P51102	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor.	Dihydroflavonol 4-reductase; Bifunctional enzyme involved in flavonoid metabolism.	0.582
3AT1	GSTF12	Q9ZWB4	Q9FE46	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor.	Glutathione S-transferase F12; Involved in the transport and/or accumulation of both anthocyanins and proanthocyanidins (PA)s in the vacuole. Functions in the cytosol to maintain the regular accumulation in the vacuole of PA precursors, such as epicatechin and glycosylated epicatechin.	0.720
3AT1	LDOX	Q9ZWB4	Q96323	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor.	Leucoanthocyanidin dioxygenase; Involved in anthocyanin and protoanthocyanidin biosynthesis by catalyzing the oxidation of leucoanthocyanidins into anthocyanidins. Possesses low flavonol synthase activity in vitro towards dihydrokaempferol and dihydroquercetin producing kaempferol and quercitin, respectively. Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.500
3AT1	MYB75	Q9ZWB4	Q9FE25	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor.	Transcription factor MYB75; Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of. phenylpropanoid-derived compounds such as anthocyanins and proanthocyanidin, probably together with GL3 and BHLH2. Regulates the expression of CHS, DFRA, LDOX, and BAN.	0.414
3AT1	MYB90	Q9ZWB4	Q9ZTC3	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor.	Transcription factor MYB90; Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins.	0.558
3AT1	UGT75C1	Q9ZWB4	Q0WW21	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor.	UDP-glycosyltransferase 75C1; Catalyzes the glycosylation of anthocyanins from UDP-glucose. Belongs to the UDP-glycosyltransferase family.	0.816
3AT1	UGT78D2	Q9ZWB4	Q9LFJ8	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor.	Flavonol 3-O-glucosyltransferase; Flavonol 3-O-glucosyltransferase that catalyzes the transfer of glucose from UDP-glucose to the 3-OH position of quercetin and kaempferol. Possesses high quercetin 3-O-glucosyltransferase activity in vitro. Catalyzes the glycosylation of anthocyanins from UDP-glucose. Also active in vitro on benzoates and benzoate derivatives. Belongs to the UDP-glycosyltransferase family.	0.669
3AT2	5MAT	Q9LR73	Q9LJB4	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor; Belongs to the plant acyltransferase family.	Malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase; Involved in the malonylation of the 5-O-glucose residue of anthocyanin. Acts only on anthocyanin substrates containing a 5-O glucosyl moiety. Not able to catalyze acyl transfer using acetyl-CoA, butyryl-CoA, hexanoyl- CoA, benzoyl-CoA, cinnamoyl-CoA, methylmalonyl- CoA, succinyl-CoA, p-coumaroyl-CoA or caffeoyl-CoA.	0.572
3AT2	A3G2XYLT	Q9LR73	Q9LVW3	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor; Belongs to the plant acyltransferase family.	Anthocyanidin 3-O-glucoside 2'''-O-xylosyltransferase; Contributes to the last few anthocyanin biosynthetic steps. Converts cyanidin 3-O-glucoside to cyanidin 3-O-xylosyl(1->2)glucoside. Can use 3-O-glucosylated anthocyanidins/flavonols and uridine diphosphate (UDP)-xylose as substrates.	0.840
3AT2	CYP75B1	Q9LR73	Q9SD85	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor; Belongs to the plant acyltransferase family.	Flavonoid 3'-monooxygenase; Catalyzes the 3'-hydroxylation of the flavonoid B-ring to the 3',4'-hydroxylated state. Convert naringenin to eriodictyol and dihydrokaempferol to dihydroquercetin; Belongs to the cytochrome P450 family.	0.538
3AT2	DFRA	Q9LR73	P51102	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor; Belongs to the plant acyltransferase family.	Dihydroflavonol 4-reductase; Bifunctional enzyme involved in flavonoid metabolism.	0.705
3AT2	GSTF12	Q9LR73	Q9FE46	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor; Belongs to the plant acyltransferase family.	Glutathione S-transferase F12; Involved in the transport and/or accumulation of both anthocyanins and proanthocyanidins (PA)s in the vacuole. Functions in the cytosol to maintain the regular accumulation in the vacuole of PA precursors, such as epicatechin and glycosylated epicatechin.	0.742
3AT2	MYB75	Q9LR73	Q9FE25	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor; Belongs to the plant acyltransferase family.	Transcription factor MYB75; Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of. phenylpropanoid-derived compounds such as anthocyanins and proanthocyanidin, probably together with GL3 and BHLH2. Regulates the expression of CHS, DFRA, LDOX, and BAN.	0.603
3AT2	MYB90	Q9LR73	Q9ZTC3	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor; Belongs to the plant acyltransferase family.	Transcription factor MYB90; Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins.	0.621
3AT2	TT8	Q9LR73	Q9FT81	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor; Belongs to the plant acyltransferase family.	Transcription factor TT8; Transcription activator, when associated with MYB75/PAP1 or MYB90/PAP2. Involved in the control of flavonoid pigmentation. Plays a key role in regulating leucoanthocyanidin reductase (BANYULS) and dihydroflavonol-4-reductase (DFR). Not required for leucoanthocyanidin dioxygenase (LDOX) expression.	0.466
3AT2	UGT75C1	Q9LR73	Q0WW21	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor; Belongs to the plant acyltransferase family.	UDP-glycosyltransferase 75C1; Catalyzes the glycosylation of anthocyanins from UDP-glucose. Belongs to the UDP-glycosyltransferase family.	0.918
3AT2	UGT78D2	Q9LR73	Q9LFJ8	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2; Involved in the acylation of the 6'' position of the 3-O- glucose residue of anthocyanin. Also able to use flavonol 3-glucosides as the acyl acceptor; Belongs to the plant acyltransferase family.	Flavonol 3-O-glucosyltransferase; Flavonol 3-O-glucosyltransferase that catalyzes the transfer of glucose from UDP-glucose to the 3-OH position of quercetin and kaempferol. Possesses high quercetin 3-O-glucosyltransferase activity in vitro. Catalyzes the glycosylation of anthocyanins from UDP-glucose. Also active in vitro on benzoates and benzoate derivatives. Belongs to the UDP-glycosyltransferase family.	0.627