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| | RH17 | DEAD-box ATP-dependent RNA helicase 17; Belongs to the DEAD box helicase family. DDX31/DBP7 subfamily. (609 aa) |
| | PIE1 | Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1; Component of the SWR1 complex which mediates the ATP- dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes (e.g. FLC) by chromatin remodeling. Probable DNA-dependent ATPase. Not involved in the repression of FLC in gametophytes, but required for the reactivation of FLC in early embryos and for the maintenance of full activation of FLC in late embryos. Belongs to the SNF2/RAD54 helicase family. SWR1 subfamily. (2055 aa) |
| | RH1 | DEAD-box ATP-dependent RNA helicase 1; Belongs to the DEAD box helicase family. DDX51/DBP6 subfamily. (522 aa) |
| | BRM | ATP-dependent helicase BRM; ATPase subunit of a multiprotein complex equivalent of the SWI/SNF complex that acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. Represses embryonic genes in leaves and controls shoot development and flowering. Activates flower homeotic genes. The association of BRM with its target genes requires REF6. Necessary to acquire heat stress (HS) memory, by globally binding to HS memory genes. (2193 aa) |
| | TEB | Helicase and polymerase-containing protein TEBICHI; Required for regulated cell division and differentiation in meristems and embryos, thus modulating adaxial-abaxial polarity. Regulates the progression of cell cycle and DNA replication (e.g. G2/M progression and intrachromosomal recombination) and the expression of genes during development, especially genes nearby the Helitron transposons; Belongs to the helicase family. (2154 aa) |
| | RH15 | DEAD-box ATP-dependent RNA helicase 15; ATP-dependent RNA helicase involved in pre-mRNA splicing. Required for the export of mRNA out of the nucleus. In addition to ssRNA and dsRNA, binds dsDNA, but not ssDNA. Belongs to the DEAD box helicase family. DECD subfamily. (427 aa) |
| | RH39 | DEAD-box ATP-dependent RNA helicase 39; Belongs to the DEAD box helicase family. (621 aa) |
| | RH41 | DEAD-box ATP-dependent RNA helicase 41; Belongs to the DEAD box helicase family. DDX59 subfamily. (505 aa) |
| | DCL2 | Endoribonuclease Dicer homolog 2; Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS). Involved in the processing of natural small interfering RNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving small dsRNAs into 24 nucleotide nat- siRNAs. Plays an essential role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL4 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long- distance silenci [...] (1388 aa) |
| | RH58 | DEAD-box ATP-dependent RNA helicase 58, chloroplastic. (472 aa) |
| | RH7 | DEAD-box ATP-dependent RNA helicase 7. (671 aa) |
| | MFE16.8 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5; May be involved in pre-mRNA splicing. (1168 aa) |
| | XPB1 | General transcription and DNA repair factor IIH helicase subunit XPB1; ATP-dependent 3'-5' DNA helicase, component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. The ATPase activity of XPB, but not its helicase activity, is required for DNA [...] (767 aa) |
| | RECQL5 | ATP-dependent DNA helicase Q-like 5; 3'-5' DNA helicase that may play a role in the repair of DNA. (911 aa) |
| | CHR25 | Protein CHROMATIN REMODELING 25; Dissociates RAD51 from nucleoprotein filaments formed on dsDNA. Could be involved in the turnover of RAD51 protein-dsDNA filaments. Addition of RAD54 overcomes inhibition of DNA strand exchange by RAD51 bound to substrate dsDNA. Species preference in the RAD51 dissociation and DNA strand exchange assays underlines the importance of specific RAD54-RAD51 interactions. RAD51 is unable to release dsDNA upon ATP hydrolysis, leaving it stuck on the heteroduplex DNA product after DNA strand exchange (By similarity). Involved in DNA repair and mitotic recombina [...] (910 aa) |
| | RH21 | DEAD-box ATP-dependent RNA helicase 21; ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing (By similarity); Belongs to the DEAD box helicase family. DDX23/PRP28 subfamily. (733 aa) |
| | DCL4 | Dicer-like protein 4; Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS). Functions in the biogenesis of trans-acting small interfering RNAs (ta-siRNAs, derived from the TAS1, TAS2 or TAS3 endogenous transcripts) by cleaving small dsRNAs into 21- 24 nucleotide ta-siRNAs. Functions with the dsRNA-binding protein DRB4 in ta-siRNAs processing. Acts in the RDR6/SGS3/DCL4/AGO7 ta-siRNA pathway involved in leaf developmental timing. Plays a role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL2 a [...] (1702 aa) |
| | TIF4A-2 | Eukaryotic initiation factor 4A-2; ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity). (412 aa) |
| | EIF4A1 | Eukaryotic initiation factor 4A-1; ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon; Belongs to the DEAD box helicase family. eIF4A subfamily. (412 aa) |
| | F3I3.40 | ATP-dependent RNA helicase DEAH11, chloroplastic; Belongs to the DEAD box helicase family. DEAH subfamily. (1787 aa) |
| | RH33 | Putative DEAD-box ATP-dependent RNA helicase 33; Belongs to the DEAD box helicase family. (845 aa) |
| | RH29 | Putative DEAD-box ATP-dependent RNA helicase 29; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (845 aa) |
| | BRR2B | DExH-box ATP-dependent RNA helicase DExH13; RNA helicase that plays an essential role in pre-mRNA splicing as component of the U5 snRNP and U4/U6-U5 tri-snRNP complexes. Involved in spliceosome assembly, activation and disassembly. (2172 aa) |
| | RH24 | DEAD-box ATP-dependent RNA helicase 24; Belongs to the DEAD box helicase family. (760 aa) |
| | F17A22.7 | DExH-box ATP-dependent RNA helicase DExH8; Belongs to the DExH box helicase family. (1015 aa) |
| | FANCM | DEAD-box ATP-dependent RNA helicase FANCM; Involved in ordered homologous recombination (HR) events in somatic and meiotic cells. Involved in the suppression of spontaneous HR events in somatic cells. Has an opposite function to the DNA binding cofactor MHF1 which promotes spontaneous HR. Functions in replicative repair independently of MHF1 and in a parallel pathway to the endonuclease MUS81. Acts in the same pathway as the two DNA- binding cofactors MHF1 and MHF2 to restrain class II meiotic crossover (CO), and acts exclusively with MHF1 and MHF2 during meiosis to repair DNA interstr [...] (1344 aa) |
| | F12B17_280 | ATP-dependent RNA helicase DEAH12, chloroplastic; Belongs to the DEAD box helicase family. DEAH subfamily. (1775 aa) |
| | K13H13.20 | DExH-box ATP-dependent RNA helicase DExH18, mitochondrial; Major helicase player in mitochondrial RNA metabolism. Component of the mitochondrial degradosome (mtEXO) complex, that degrades 3' overhang double-stranded RNA with a 3'-to-5' directionality in an ATP-dependent manner. ATPase and ATP-dependent multisubstrate helicase, able to unwind double-stranded (ds) DNA and RNA, and RNA/DNA heteroduplexes in the 5'-to-3' direction. Plays a role in the RNA surveillance system in mitochondria; regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degra [...] (776 aa) |
| | CHR4 | Protein CHROMATIN REMODELING 4; Chromatin-remodeling protein that binds DNA through histones and regulates gene transcription. May specifically recognize and bind trimethylated 'Lys-27' (H3K27me3) and non-methylated 'Lys-4' of histone H3 (By similarity). Probable chromatin remodeling factor. Belongs to the SNF2/RAD54 helicase family. (2223 aa) |
| | MXM12.5 | annotation not available (1194 aa) |
| | CLSY2 | SNF2 domain-containing protein CLASSY 2; Probable chromatin remodeling factor. (1261 aa) |
| | CUV | Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; Involved in pre-mRNA splicing by mediating structural transitions of the spliceosome during the catalytic step. Facilitates expression of genes involved in auxin-mediated development including male-gametophyte transmission, apical-basal patterning of embryonic and gynoecium development, stamen development, phyllotactic flower positioning, and vascular development. Also involved in root-meristem maintenance and planar polarity of root-hair positioning. Acts as a component of RNA silencing that regulates distinct classes of endog [...] (1255 aa) |
| | MEE13.8 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. (961 aa) |
| | CHR23 | Probable ATP-dependent DNA helicase CHR23; Probable chromatin-remodeling factor that is functionally redundant with CHR12 in root and shoot stem cell initiation and root apical meristem (RAM) and shoot apical meristem (SAM) maintenance. Can associate with the promoter region of WOX5. May promote seed maturation and repress initiation of germination. May repress plant growth. (1064 aa) |
| | CHR17 | ISWI chromatin-remodeling complex ATPase CHR17; Possesses intrinsic ATP-dependent nucleosome-remodeling activity. Constitutes the catalytic subunit of several complexes capable of forming ordered nucleosome arrays on chromatin (By similarity). Involved in the formation of nucleosome distribution patterns. Required for the maintenance of the plant vegetative phase. In association with RLT1 or RLT2 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. Necessar [...] (1069 aa) |
| | CHR7 | CHD3-type chromatin-remodeling factor CHR7; Chromatin remodeling factor that represses the expression of embryonic trait genes upon and after seed germination and thus enables the developmental switch to post-germinative growth. (1202 aa) |
| | F28J12.120-2 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9; May be involved in pre-mRNA splicing; Belongs to the DEAD box helicase family. DEAH subfamily. DDX35 sub-subfamily. (695 aa) |
| | F1C9.16 | ATP-dependent DNA helicase At3g02060, chloroplastic. (823 aa) |
| | SKI2 | DExH-box ATP-dependent RNA helicase DExH11; Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C). Involved in the regulation of potassium deprivation stress response. (1347 aa) |
| | CHR12 | Probable ATP-dependent DNA helicase CHR12; Probable chromatin-remodeling factor that is functionally redundant with CHR23 in root and shoot stem cell initiation, and root apical meristem (RAM) and shoot apical meristem (SAM) maintenance. Plays an important role in mediating the temporary plant growth arrest induced upon perception of stress. May promote seed maturation and repress initiation of germination. (1102 aa) |
| | FRG3 | annotation not available (638 aa) |
| | CHR5 | Protein CHROMATIN REMODELING 5; DNA-binding helicase that specifically binds to the promoter of target genes, leading to chromatin remodeling, possibly by promoting deposition of histone H3.3 (By similarity). Probable chromatin remodeling factor. (1724 aa) |
| | CHR10 | Probable helicase CHR10; Probable helicase-like transcription factor. (877 aa) |
| | HVT1 | DExH-box ATP-dependent RNA helicase DExH6; May function as an ATP-dependent RNA/DNA helicase. (1299 aa) |
| | RECG | ATP-dependent DNA helicase homolog RECG, chloroplastic; Critical role in recombination and DNA repair. (973 aa) |
| | F10A8.1 | DExH-box ATP-dependent RNA helicase DExH5, mitochondrial; Belongs to the DExH box helicase family. (1113 aa) |
| | F11F19.17 | DExH-box ATP-dependent RNA helicase DExH1. (995 aa) |
| | SYD | Chromatin structure-remodeling complex protein SYD; Catalytic component of the chromatin structure-remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. Controls stem cell fate via the transcription regulation of WUS in the shoot apical meristem, by modulating its promoter. LFY-dependent repressor of the meristem identity switch from vegetative to reproductive development probably by modulating chromatin state. Involved in the regulation of floral homeotic gene expression in response to environmental stimuli. Required for carpel and ovule d [...] (3574 aa) |
| | NIH | DExH-box ATP-dependent RNA helicase DExH2; May function as an ATP-dependent RNA/DNA helicase. Binds DNA in vitro in a non-specific manner; Belongs to the DExH box helicase family. (1576 aa) |
| | XPD | General transcription and DNA repair factor IIH helicase subunit XPD; ATP-dependent 5'-3' DNA helicase, component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. The ATP-dependent helicase activity of XPD is required for DNA opening. In tran [...] (758 aa) |
| | RH47 | DEAD-box ATP-dependent RNA helicase 47, mitochondrial; Essential protein required during embryogenesis. Required for mitochondrial metabolism. Necessary for normal plasmodesmata (PD) development and aperture regulation. Belongs to the DEAD box helicase family. (551 aa) |
| | CHR24 | Protein CHROMATIN REMODELING 24; DNA helicase that acts as an essential component of the spindle assembly checkpoint (By similarity). Probable chromatin remodeling factor that regulate homologous recombination (HR) and non- homologous recombination (NHR). (1090 aa) |
| | ETL1 | Protein CHROMATIN REMODELING 19; DNA helicase that possesses intrinsic ATP-dependent nucleosome-remodeling activity and is both required for DNA repair and heterochromatin organization. Promotes DNA end resection of double- strand breaks (DSBs) following DNA damage: probably acts by weakening histone DNA interactions in nucleosomes flanking DSBs (By similarity). Probable chromatin remodeling factor. Probable helicase-like transcription factor involved in transcriptional gene silencing. Associates with SUVR2 and contributes to transcriptional gene silencing at RNA-directed DNA methylati [...] (763 aa) |
| | CHR8 | Protein CHROMATIN REMODELING 8; Essential factor involved in transcription-coupled nucleotide excision repair (TCR) which allows RNA polymerase II-blocking lesions to be rapidly removed from the transcribed strand of active genes. Upon DNA-binding, it locally modifies DNA conformation by wrapping the DNA around itself, thereby modifying the interface between stalled RNA polymerase II and DNA. It is required for transcription-coupled repair complex formation; Belongs to the SNF2/RAD54 helicase family. (1187 aa) |
| | HEN2 | DExH-box ATP-dependent RNA helicase DExH10; ATP-dependent RNA helicase that associates with the RNA exosome complex, with the cap binding complex (CBC) and with the NEXT- like complex. Involved in the degradation of a large number of non- coding nuclear exosome substrates such as snoRNA and miRNA precursors, incompletely spliced mRNAs, and spurious transcripts produced from pseudogenes and intergenic regions. Involved in the maintenance of homeotic B and C gene expression in the reproductive whorls. Regulates floral organ spacing and identity, probably through the regulation of protein [...] (995 aa) |
| | RH30 | DEAD-box ATP-dependent RNA helicase 30; ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing; Belongs to the DEAD box helicase family. DDX5/DBP2 subfamily. (591 aa) |
| | RH13 | DEAD-box ATP-dependent RNA helicase 13; Belongs to the DEAD box helicase family. DDX24/MAK5 subfamily. (826 aa) |
| | RH38 | DEAD-box ATP-dependent RNA helicase 38; ATP-dependent RNA helicase essential for mRNA export from the nucleus. Plays an important role in the positive regulation of CBF/DREB transcription factors. (496 aa) |
| | RH22 | DEAD-box ATP-dependent RNA helicase 22; Belongs to the DEAD box helicase family. (581 aa) |
| | EIF4A3 | Eukaryotic initiation factor 4A-III homolog; ATP-dependent RNA helicase. Core component of the splicing- dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs through [...] (408 aa) |
| | CHR28 | Helicase-like transcription factor CHR28; Probable helicase-like transcription factor involved in transcriptional gene silencing. Associates with SUVR2 and contributes to transcriptional gene silencing at RNA-directed DNA methylation (RdDM) target loci but also at RdDM-independent target loci. May be involved in nucleosome positioning to form ordered nucleosome arrays on chromatin. Associates with SUVR2 and functions redundantly with FRG1. Required for the efficient methylation of a broad range of RdDM target loci. (981 aa) |
| | RH6 | DEAD-box ATP-dependent RNA helicase 6; ATP-dependent RNA helicase involved in mRNA turnover, and more specifically in mRNA decapping; Belongs to the DEAD box helicase family. DDX6/DHH1 subfamily. (528 aa) |
| | RH25 | DEAD-box ATP-dependent RNA helicase 25; Belongs to the DEAD box helicase family. (563 aa) |
| | RH5 | DEAD-box ATP-dependent RNA helicase 5; ATP-dependent RNA helicase required for 60S ribosomal subunit synthesis. Involved in efficient pre-rRNA processing, predominantly at site A3, which is necessary for the normal formation of 25S and 5.8S rRNAs (By similarity); Belongs to the DEAD box helicase family. DDX5/DBP2 subfamily. (537 aa) |
| | T15M6.6 | DExH-box ATP-dependent RNA helicase DExH4, chloroplastic; Belongs to the DExH box helicase family. (1417 aa) |
| | RH20 | DEAD-box ATP-dependent RNA helicase 20; ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing; Belongs to the DEAD box helicase family. DDX5/DBP2 subfamily. (501 aa) |
| | FAS4 | ATP-dependent RNA helicase DEAH13; Belongs to the DEAD box helicase family. DEAH subfamily. (1237 aa) |
| | RH34 | DEAD-box ATP-dependent RNA helicase 34; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily. (392 aa) |
| | RH48 | Probable DEAD-box ATP-dependent RNA helicase 48; Belongs to the DEAD box helicase family. (798 aa) |
| | F19K16.15 | RAD3-like DNA-binding helicase protein. (882 aa) |
| | TIF4A-3 | Eukaryotic initiation factor 4A-3; ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity). (414 aa) |
| | MUG13.1 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3; Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for transcriptional activation or repression of specific target promoters (By similarity). Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily. (881 aa) |
| | ABO6 | ATP-dependent RNA helicase A-like protein. (1161 aa) |
| | RH31 | DEAD-box ATP-dependent RNA helicase 31; Belongs to the DEAD box helicase family. (716 aa) |
| | RH32 | DEAD-box ATP-dependent RNA helicase 32; Belongs to the DEAD box helicase family. DDX10/DBP4 subfamily. (739 aa) |
| | RAD5B | DNA repair protein RAD5B; Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for DNA repair. Does not seem to be required for DNA repair and regulation of homologous recombination (HR) ; Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily. (1277 aa) |
| | RH18 | DEAD-box ATP-dependent RNA helicase 18; Belongs to the DEAD box helicase family. DDX55/SPB4 subfamily. (593 aa) |
| | RAD5A | DNA repair protein RAD5A; Functions in error-free postreplication DNA repair or DNA- damage tolerance (DTT) pathway. Required for homologous recombination (HR) induced by DNA double-strand break (DSB) in somatic cells. Required for damage- induced DNA repair, independently of MUS81 and RECQL4A. Plays a role in synthesis-dependent strand annealing (SDSA) but not in single-strand annealing (SSA). Possesses double-stranded DNA- dependent ATPase activity. Is able to regress replication forks with preference for forks with a leading strand gap. Is able to catalyze branch migration of Hollid [...] (1029 aa) |
| | RH26 | DEAD-box ATP-dependent RNA helicase 26; Belongs to the DEAD box helicase family. (850 aa) |
| | BRR2C | DExH-box ATP-dependent RNA helicase DExH14; RNA helicase that plays an essential role in pre-mRNA splicing as component of the U5 snRNP and U4/U6-U5 tri-snRNP complexes. Involved in spliceosome assembly, activation and disassembly. Belongs to the DExH box helicase family. (2157 aa) |
| | RECQSIM | ATP-dependent DNA helicase Q-like SIM; Plant specific 3'-5' DNA helicase that may play a role in the repair of DNA. (858 aa) |
| | RECQL4B | ATP-dependent DNA helicase Q-like 4B; 3'-5' DNA helicase that may play a role in the repair of DNA (By similarity). Required to promote but not to suppress crossovers. (1150 aa) |
| | RECQL3 | ATP-dependent DNA helicase Q-like 3; 3'-5' DNA helicase that may play a role in the repair of DNA. Exhibits an ATP or dATP-dependent DNA-helicase activity. Can not use GTP/dGTP, CTP/dCTP or UTP/dUTP as nucleotide cofactors. Catalyzes DNA strand annealing. On nicked Holliday junctions, unwinds the lagging strand. Cannot act on intact Holliday junctions. Belongs to the helicase family. RecQ subfamily. (713 aa) |
| | RECQL2 | ATP-dependent DNA helicase Q-like 2; 3'-5' DNA helicase that may play a role in the repair of DNA. Its DNA unwinding activity in vitro is dependent on magnesium, and ATP or dATP. Can use GTP/dGTP, CTP/dCTP or UTP/dUTP as nucleotide cofactors. Catalyzes Holliday junction branch migration and replication fork regression. Disrupts D-loop structures ; Belongs to the helicase family. RecQ subfamily. (705 aa) |
| | RECQL1 | ATP-dependent DNA helicase Q-like 1; 3'-5' DNA helicase that may play a role in the repair of DNA. Belongs to the helicase family. RecQ subfamily. (606 aa) |
| | XPB2 | General transcription and DNA repair factor IIH helicase subunit XPB2; ATP-dependent 3'-5' DNA helicase, component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. The ATPase activity of XPB, but not its helicase activity, is required for DNA [...] (766 aa) |
| | RH55 | DEAD-box ATP-dependent RNA helicase 55; Belongs to the DEAD box helicase family. DDX55/SPB4 subfamily. (465 aa) |
| | RH44 | Putative DEAD-box ATP-dependent RNA helicase 44. (622 aa) |
| | RH56 | DEAD-box ATP-dependent RNA helicase 56; ATP-dependent RNA helicase involved in pre-mRNA splicing. Required for the export of mRNA out of the nucleus. In addition to ssRNA and dsRNA, binds dsDNA, but not ssDNA. Belongs to the DEAD box helicase family. DECD subfamily. (427 aa) |
| | CHR27 | Helicase-like transcription factor CHR27; Probable helicase-like transcription factor involved in transcriptional gene silencing. Associates with SUVR2 and contributes to transcriptional gene silencing at RNA-directed DNA methylation (RdDM) target loci but also at RdDM-independent target loci. May be involved in nucleosome positioning to form ordered nucleosome arrays on chromatin. Associates with SUVR2 and functions redundantly with FRG2. Required for the efficient methylation of a broad range of RdDM target loci. (1047 aa) |
| | RH51 | DEAD-box ATP-dependent RNA helicase 51; Belongs to the DEAD box helicase family. DDX18/HAS1 subfamily. (568 aa) |
| | CLSY4 | SNF2 domain-containing protein CLASSY 4; Probable chromatin remodeling factor. (1132 aa) |
| | RH35 | DEAD-box ATP-dependent RNA helicase 35; Belongs to the DEAD box helicase family. DDX41 subfamily. (591 aa) |
| | RH53 | DEAD-box ATP-dependent RNA helicase 53, mitochondrial. (616 aa) |
| | RH9 | DEAD-box ATP-dependent RNA helicase 9, mitochondrial. (610 aa) |
| | DCL3 | Endoribonuclease Dicer homolog 3; Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS). Involved in the processing of repeat-associated small interfering RNAs (ra-siRNAs, derived from heterochromatin and DNA repeats such as transposons) by cleaving small dsRNAs into 24 nucleotide ra-siRNAs. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cabbage leaf curl virus (CaLCuV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV [...] (1580 aa) |
| | RH46 | DEAD-box ATP-dependent RNA helicase 46. (645 aa) |
| | T12C14_10 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; May be involved in pre-mRNA splicing; Belongs to the DEAD box helicase family. DEAH subfamily. PRP43 sub-subfamily. (726 aa) |
| | T14E10.30 | F-box protein At3g54460; Belongs to the helicase family. (1378 aa) |
| | CLSY1 | SNF2 domain-containing protein CLASSY 1; Probable chromatin remodeling factor. Required for the initial establishment of DNA methylation and for accumulation of 24-nt siRNAs. May act on RNA templates by remodeling ribonucleoprotein structures and thereby influencing the availability of the RNA to polymerases. (1256 aa) |
| | RH12 | DEAD-box ATP-dependent RNA helicase 12; ATP-dependent RNA helicase involved in mRNA turnover, and more specifically in mRNA decapping; Belongs to the DEAD box helicase family. DDX6/DHH1 subfamily. (498 aa) |
| | RH52 | DEAD-box ATP-dependent RNA helicase 52; Belongs to the DEAD box helicase family. DDX3/DED1 subfamily. (646 aa) |
| | PKL | CHD3-type chromatin-remodeling factor PICKLE; Chromatin remodeling factor that represses the expression of embryonic trait genes (such as NFYB9/LEC1) upon and after seed germination and thus enables the developmental switch to post- germinative growth. Silences some MADS-box proteins such as PHE1 and PHE2. Plays a role during carpel differentiation. Regulates late processes in cytokinin signaling. (1384 aa) |
| | RH36 | DEAD-box ATP-dependent RNA helicase 36; Belongs to the DEAD box helicase family. DDX49/DBP8 subfamily. (491 aa) |
| | RH27 | DEAD-box ATP-dependent RNA helicase 27; Belongs to the DEAD box helicase family. DDX18/HAS1 subfamily. (633 aa) |
| | RH45 | DEAD-box ATP-dependent RNA helicase 45; Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily. (989 aa) |
| | DRD1 | Protein CHROMATIN REMODELING 35; Subunit of the chromatin-remodeling complex (DDR complex) that mediates RNA polymerases IV and V (Pol IV and Pol V) recruitment to chromatin. Cooperates with Pol IV and Pol V to regulates RNA- and RNAi- (RNA interference) directed non- CpG de novo DNA methylation on cytosine of genes targeted for silencing and enhancers, also known as siRNA-directed DNA methylation (RdDM), thus leading to epigenetic modification of the genome and promoting/maintaining heterochromatin. In collaboration with Pol V, mediates/maintains, in cis, methylation- associated self- [...] (888 aa) |
| | DCL1 | Endoribonuclease Dicer homolog 1; Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis pathway by cleaving primary miRNAs (pri-miRNAs) and precursor miRNAs (pre-miRNAs). Functions with DRB1/HYL1 and SERRATE proteins for accurate pri-miRNAs to miRNAs processing. Indirectly involved in the production of trans-acting small interfering RNAs (ta- siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved in the processing of [...] (1909 aa) |
| | RH40 | DEAD-box ATP-dependent RNA helicase 40; ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing; Belongs to the DEAD box helicase family. DDX5/DBP2 subfamily. (1088 aa) |
| | RH16 | DEAD-box ATP-dependent RNA helicase 16; Belongs to the DEAD box helicase family. DDX56/DBP9 subfamily. (626 aa) |
| | BRR2A | DExH-box ATP-dependent RNA helicase DExH12; RNA helicase that plays an essential role in pre-mRNA splicing as component of the U5 snRNP and U4/U6-U5 tri-snRNP complexes. Involved in spliceosome assembly, activation and disassembly. (2171 aa) |
| | RH43 | Putative DEAD-box ATP-dependent RNA helicase 43; Belongs to the DEAD box helicase family. DDX41 subfamily. (542 aa) |
| | DDM1 | ATP-dependent DNA helicase DDM1; ATP-dependent DNA helicase that plays a role in formation, organization, stability and heritability of heterochromatin and thus regulates several physiological traits. Binds to the nucleosome and promotes chromatin remodeling in an ATP-dependent manner; induces nucleosome repositioning on a short DNA fragment, and, possibly, could be guided to target sites (including silent transposable elements) by small interfering RNAs (siRNAs). Can bind both free and nucleosomal DNA. Required for the heritable maintenance of genome integrity and transcriptional gene [...] (764 aa) |
| | MTR4 | DExH-box ATP-dependent RNA helicase DExH9; ATP-dependent RNA helicase that associates with the RNA exosome complex. Required for proper rRNA biogenesis and development. Involved in the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and also in the removal of rRNA maturation by-products. (988 aa) |
| | RH28 | DEAD-box ATP-dependent RNA helicase 28; Belongs to the DEAD box helicase family. DDX27/DRS1 subfamily. (789 aa) |
| | T15M6.7 | DExH-box ATP-dependent RNA helicase DExH7, chloroplastic; Belongs to the DExH box helicase family. (1459 aa) |
| | CLSY3 | SNF2 domain-containing protein CLASSY 3; Probable chromatin remodeling factor. (1410 aa) |
| | SWI2 | Switch 2; May be involved in early DNA damage response (By similarity). Probable chromatin remodeling factor. (862 aa) |
| | F11I4_16 | DExH-box ATP-dependent RNA helicase DExH3; Belongs to the DExH box helicase family. (1197 aa) |
| | ATRX | Protein CHROMATIN REMODELING 20; Involved in transcriptional regulation and chromatin remodeling. Facilitates DNA replication in multiple cellular environments and is required for efficient replication of a subset of genomic loci. Binds to DNA tandem repeat sequences in both telomeres and euchromatin and in vitro binds DNA quadruplex structures. May help stabilizing G-rich regions into regular chromatin structures by remodeling G4 DNA and incorporating H3.3-containing nucleosomes (By similarity). Involved in DNA repair of gamma-irradiation-mediated damages. (1479 aa) |
| | EDA16 | annotation not available (1280 aa) |
| | RTEL1 | Regulator of telomere elongation helicase 1 homolog; ATP-dependent DNA helicase implicated in DNA replication, DNA repair and the maintenance of genomic stability. Acts as an anti- recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Plays also a role in preserving the stability of 45S rDNA repeats. (1040 aa) |
| | FRG5 | annotation not available (1270 aa) |
| | ISE2 | DExH-box ATP-dependent RNA helicase DExH15 chloroplastic; RNA helicase involved in group II intron splicing. Essential protein required during embryogenesis. Involved in post-transcriptional gene silencing. Modulates the determination of cell fate. Necessary for normal plasmodesmata (PD) development and aperture regulation. Belongs to the DExH box helicase family. (1171 aa) |
| | MAA3 | Probable helicase MAGATAMA 3; Probable helicase that may regulate RNA molecules involved in nucleolar organization and pollen tube guidance. Belongs to the helicase family. (818 aa) |
| | BTAF1 | TATA-binding protein-associated factor BTAF1; Involved in meristem development. Acts as positive regulator of the CUC-STM pathway in shoot apical meristem (SAM) neo-formation. Belongs to the helicase family. (2045 aa) |
| | T22D6.50 | UBQ, helicase-c and DEAD-like helicase domain-containing protein. (1175 aa) |
| | CHR34 | Chromatin remodeling 34. (823 aa) |
| | A0A1P8AWF9 | Helicase protein with RING/U-box domain-containing protein. (876 aa) |
| | F2D10.21 | RAD3-like DNA-binding helicase protein. (1269 aa) |
| | F17F16.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. (2226 aa) |
| | CHR18 | Chromatin remodeling factor18. (678 aa) |
| | ESP3 | Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1; Involved in pre-mRNA splicing. (1044 aa) |
| | INO80 | Chromatin-remodeling ATPase INO80; ATPase component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and DNA repair (By similarity). Binds DNA (By similarity). As part of the INO80 complex, remodels chromatin by shifting nucleosomes (By similarity). Positive regulator of homologous recombination, but not an essential component of homologous recombination. Not involved in the illegitimate repair pathway. Belongs to the SNF2/RAD54 helicase family. (1507 aa) |
| | RH8 | DEAD-box ATP-dependent RNA helicase 8; ATP-dependent RNA helicase involved in mRNA turnover, and more specifically in mRNA decapping; Belongs to the DEAD box helicase family. DDX6/DHH1 subfamily. (505 aa) |
| | CHR11 | ISWI chromatin-remodeling complex ATPase CHR11; Possesses intrinsic ATP-dependent nucleosome-remodeling activity. Constitutes the catalytic subunit of several complexes capable of forming ordered nucleosome arrays on chromatin (By similarity). Involved in the formation of nucleosome distribution patterns. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Required for the maintenance of the plant vegetative phase. In association with RLT1 or RLT2 may prevent the early activation of the vegetative-to-reproductive transition by regulating key [...] (1056 aa) |
| | RH11 | DEAD-box ATP-dependent RNA helicase 11; Belongs to the DEAD box helicase family. DDX3/DED1 subfamily. (612 aa) |
| | RECQL4A | ATP-dependent DNA helicase Q-like 4A; 3'-5' DNA helicase involved in DNA repair. Required for the maintenance of genome stability by modulation of the DNA damage response and repression of crossovers. Confers resistance to genotoxic stress. Suppresses spontaneous homologous recombination (HR) events in somatic cells together with its partners RMI1 and TOP3A. Contributes to the maintenance of chromosome integrity during meiosis. Involved in the removal of telomeric bridges that appear to arise during meiotic recombination. Required to resolve or dissolve MSH4-dependent telomeric associa [...] (1188 aa) |
| | RH3 | DEAD-box ATP-dependent RNA helicase 3, chloroplastic; Nuclear genome-encoded factor involved in ribosome biogenesis in chloroplasts. Binds specific group II introns in chloroplasts and facilitates their splicing. Is required for rRNA maturation in plastids and may contribute to the assembly of the large (50S) ribosomal subunit. Required for normal development of chloroplasts. Required for the expression of transcripts encoding plastid-localized enzymes involved in abscisic acid (ABA) biosynthesis. Required for maintenance of ABA levels and response to salt stress. Possesses RNA chapero [...] (748 aa) |
| | RH14 | DEAD-box ATP-dependent RNA helicase 14; ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing; Belongs to the DEAD box helicase family. DDX5/DBP2 subfamily. (619 aa) |
| | RH42 | DEAD-box ATP-dependent RNA helicase 42; Helicase required for pre-mRNA splicing, cold-responsive gene regulation and cold tolerance; Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily. (1166 aa) |
| | RH10 | DEAD-box ATP-dependent RNA helicase 10; Involved in leaf polarity establishment by functioning cooperatively with AS2 to repress abaxial genes ARF3, ARF4, KAN1, KAN2, YAB1 and YAB5, and the knox homeobox genes KNAT1, KNAT2, KNAT6, and STM to promote adaxial development in leaf primordia at shoot apical meristems at high temperatures. Involved in the processing of pre-rRNA intermediates at high temperatures; Belongs to the DEAD box helicase family. DDX47/RRP3 subfamily. (456 aa) |
| | RH49 | DEAD-box ATP-dependent RNA helicase 49; Belongs to the DEAD box helicase family. DDX55/SPB4 subfamily. (558 aa) |
| | RH50 | DEAD-box ATP-dependent RNA helicase 50; Probably involved in resistance to biotic and abiotic stresses. (781 aa) |
| | RH37 | DEAD-box ATP-dependent RNA helicase 37; Belongs to the DEAD box helicase family. DDX3/DED1 subfamily. (633 aa) |
| | RH57 | DEAD-box ATP-dependent RNA helicase 57; Belongs to the DEAD box helicase family. DDX52/ROK1 subfamily. (541 aa) |
