79 items (Arabidopsis thaliana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6E13.2	Pectin lyase-like superfamily protein. (392 aa)
	F17N18.100	Putative pectate lyase 14; Belongs to the polysaccharide lyase 1 family. (438 aa)
	F9D16.290	Pectin lyase-like superfamily protein. (444 aa)
	T2J13.210	Glycoside hydrolase family 28 protein. (469 aa)
	F6E13.1	Pectin lyase-like superfamily protein. (394 aa)
	F26H6.3	Pectin lyase-like superfamily protein. (404 aa)
	F17A17.16	Pectin lyase-like superfamily protein. (391 aa)
	F17A17.17	Pectin lyase-like superfamily protein. (397 aa)
	F17A17.18	Pectin lyase-like superfamily protein. (401 aa)
	QRT2	Polygalacturonase QRT2; Polygalacturonase required for cell type-specific pectin degradation to separate microspores. Involved in anther dehiscence and floral organ abscission. (439 aa)
	T4D2.120	Probable pectate lyase 12. (483 aa)
	T07M07.19	Pectin lyase-like superfamily protein. (404 aa)
	F18P9_110	Pectin lyase-like superfamily protein. (484 aa)
	T15N1.140	Pectin lyase-like superfamily protein. (435 aa)
	MSJ11.12	Probable polygalacturonase At3g15720. (456 aa)
	Q9LVJ4_ARATH	Pectin lyase-like superfamily protein. (445 aa)
	MIF21.3	Pectin lyase-like superfamily protein. (395 aa)
	MUJ8.14	Probable pectate lyase 9. (452 aa)
	MSD24.10	Probable pectate lyase 10. (440 aa)
	T5E8.80	Pectate lyase. (297 aa)
	F12A21.12	Probable pectate lyase 5. (408 aa)
	F25P12.85	Pectin lyase-like superfamily protein. (434 aa)
	T14P4.18	Pectin lyase-like superfamily protein. (491 aa)
	Q9FPJ2_ARATH	Pectin lyase-like superfamily protein. (471 aa)
	K16L22.16	Pectin lyase-like superfamily protein. (449 aa)
	K23L20.18	Pectin lyase-like superfamily protein. (332 aa)
	MKP11.14	Pectin lyase-like superfamily protein. (421 aa)
	F24J13.7	Putative polygalacturonase; 18642-16492. (468 aa)
	F2H10.12	Glycoside hydrolase family 28 protein. (404 aa)
	F2H10.11	Pectin lyase-like superfamily protein. (444 aa)
	F2H10.10	Pectin lyase-like superfamily protein. (444 aa)
	F22K18.20	Probable pectate lyase 18; Belongs to the polysaccharide lyase 1 family. (408 aa)
	Q94C86_ARATH	Pectin lyase-like superfamily protein. (455 aa)
	F18B13.25	Probable polygalacturonase At1g80170; Belongs to the glycosyl hydrolase 28 family. (444 aa)
	F21D18.17	Polygalacturonase At1g48100; Polygalacturonase not involved in the final stages of pod shatter; Belongs to the glycosyl hydrolase 28 family. (475 aa)
	F18F4.140	Pectin lyase-like superfamily protein. (483 aa)
	MDC12_15	Probable pectate lyase 22. (432 aa)
	K19E20.1	Probable pectate lyase 20. (417 aa)
	F26H6.2	Pectin lyase-like superfamily protein. (402 aa)
	ADPG2	Polygalacturonase ADPG2; Polygalacturonase involved in cell separation in the final stages of pod shatter, in anther dehiscence and in floral organ abscission; Belongs to the glycosyl hydrolase 28 family. (433 aa)
	Q8RX04_ARATH	Pectin lyase-like superfamily protein; Belongs to the glycosyl hydrolase 28 family. (449 aa)
	F17M5.200	Pectin lyase-like superfamily protein. (475 aa)
	PGX1	Pectin lyase-like superfamily protein. (470 aa)
	T29E15.10	Glycoside hydrolase family 28 protein/polygalacturonase family protein. (477 aa)
	F17A17.19	Exopolygalacturonase clone GBGA483; May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo- polygalacturonase. (444 aa)
	PGA3	Exopolygalacturonase clone GBGE184; May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo- polygalacturonase. (422 aa)
	F16G20.200	Pectin lyase-like superfamily protein; Belongs to the glycosyl hydrolase 28 family. (495 aa)
	F3F20.10	Pectin lyase-like superfamily protein. (394 aa)
	RHS14	Probable pectate lyase 16. (394 aa)
	QRT3	Polygalacturonase QRT3; Polygalacturonase required for degrading the pollen mother cell wall during microspore development; Belongs to the glycosyl hydrolase 28 family. (481 aa)
	NMA	Glycoside hydrolase family 28 protein / polygalacturonase (Pectinase) family protein. (664 aa)
	T9J22.29	Pectin lyase-like superfamily protein. (402 aa)
	ADPG1	Polygalacturonase ADPG1; Polygalacturonase involved in cell separation in the final stages of pod shatter and in anther dehiscence. Not involved in floral organ abscission. (431 aa)
	F18O19.3	Probable polygalacturonase At2g43860. (405 aa)
	F18O19.2	Pectin lyase-like superfamily protein. (384 aa)
	F8A5.12	Pectin lyase-like superfamily protein. (540 aa)
	F5I14.10	Pectin lyase-like superfamily protein. (397 aa)
	MYH19.70	Pectin lyase-like superfamily protein. (373 aa)
	K21C13.1	Pectin lyase-like superfamily protein. (391 aa)
	F4K4C2_ARATH	Pectin lyase-like superfamily protein. (458 aa)
	F8B4.80	Pectin lyase superfamily protein. (453 aa)
	F4JUA4_ARATH	Pectin lyase-like superfamily protein. (423 aa)
	F8B4.70	Pectin lyase-like superfamily protein. (342 aa)
	F18A5.150	Pectin lyase-like superfamily protein. (404 aa)
	T9A21.20	Pectin lyase-like superfamily protein. (422 aa)
	F8D20.180	Pectin lyase-like superfamily protein. (394 aa)
	T7B11.15	Pectin lyase-like superfamily protein. (467 aa)
	F4J3I0_ARATH	Pectin lyase-like superfamily protein; Belongs to the glycosyl hydrolase 28 family. (490 aa)
	F26H6.16	Pectin lyase-like superfamily protein. (404 aa)
	T29M8.4	Pectin lyase-like superfamily protein. (506 aa)
	F3F9.9	Pectin lyase-like superfamily protein; Belongs to the glycosyl hydrolase 28 family. (404 aa)
	F28C11.9	Pectin lyase-like superfamily protein. (460 aa)
	F20D23.15	Pectin lyase-like superfamily protein; Belongs to the glycosyl hydrolase 28 family. (402 aa)
	F20B24.8	Pectin lyase-like superfamily protein. (532 aa)
	F18B13.22	Pectin lyase-like superfamily protein. (336 aa)
	A0A1I9LS88	Pectin lyase-like superfamily protein. (589 aa)
	A0A1I9LP65	Pectin lyase-like superfamily protein. (432 aa)
	A0A1I9LN94	Pectin lyase-like superfamily protein. (447 aa)
	F3F20.11	Pectin lyase-like superfamily protein. (394 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1I9LN94	A0A1I9LP65	A0A1I9LN94	A0A1I9LP65	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.495
A0A1I9LN94	ADPG1	A0A1I9LN94	O23147	Pectin lyase-like superfamily protein.	Polygalacturonase ADPG1; Polygalacturonase involved in cell separation in the final stages of pod shatter and in anther dehiscence. Not involved in floral organ abscission.	0.409
A0A1I9LN94	F17A17.16	A0A1I9LN94	Q9SFD2	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.879
A0A1I9LN94	F17A17.17	A0A1I9LN94	Q9SFD1	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.599
A0A1I9LN94	F17A17.18	A0A1I9LN94	Q9SFD0	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.650
A0A1I9LN94	F17A17.19	A0A1I9LN94	P49063	Pectin lyase-like superfamily protein.	Exopolygalacturonase clone GBGA483; May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo- polygalacturonase.	0.438
A0A1I9LN94	F17N18.100	A0A1I9LN94	Q9SVQ6	Pectin lyase-like superfamily protein.	Putative pectate lyase 14; Belongs to the polysaccharide lyase 1 family.	0.824
A0A1I9LN94	F18A5.150	A0A1I9LN94	F4JTS9	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.493
A0A1I9LN94	F18B13.22	A0A1I9LN94	F4HS31	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.446
A0A1I9LN94	F18O19.2	A0A1I9LN94	O22817	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.494
A0A1I9LN94	F20B24.8	A0A1I9LN94	F4I5U6	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.524
A0A1I9LN94	F20D23.15	A0A1I9LN94	F4I650	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein; Belongs to the glycosyl hydrolase 28 family.	0.493
A0A1I9LN94	F21D18.17	A0A1I9LN94	Q949Z1	Pectin lyase-like superfamily protein.	Polygalacturonase At1g48100; Polygalacturonase not involved in the final stages of pod shatter; Belongs to the glycosyl hydrolase 28 family.	0.483
A0A1I9LN94	F24J13.7	A0A1I9LN94	Q9CAL5	Pectin lyase-like superfamily protein.	Putative polygalacturonase; 18642-16492.	0.455
A0A1I9LN94	F26H6.16	A0A1I9LN94	F4IIG2	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.494
A0A1I9LN94	F26H6.3	A0A1I9LN94	Q9SJN7	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.496
A0A1I9LN94	F28C11.9	A0A1I9LN94	F4I672	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.450
A0A1I9LN94	F2H10.10	A0A1I9LN94	Q9C8C2	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.491
A0A1I9LN94	F2H10.11	A0A1I9LN94	Q9C8C3	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.491
A0A1I9LN94	F3F20.10	A0A1I9LN94	Q9SYK6	Pectin lyase-like superfamily protein.	Pectin lyase-like superfamily protein.	0.504