20 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC09g12750D	BnaC09g12750D protein. (294 aa)
	BnaA08g13850D	BnaA08g13850D protein. (644 aa)
	BnaC03g30050D	BnaC03g30050D protein. (911 aa)
	BnaC09g47550D	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (385 aa)
	BnaC05g40110D	BnaC05g40110D protein. (143 aa)
	BnaC09g42100D	BnaC09g42100D protein. (40 aa)
	BnaA06g10160D	BnaA06g10160D protein. (1571 aa)
	BnaC02g06840D	BnaC02g06840D protein. (868 aa)
	BnaA07g12530D	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (528 aa)
	BnaC06g12430D	BnaC06g12430D protein. (223 aa)
	BnaAnng09360D	BnaAnng09360D protein. (1402 aa)
	BnaCnng19210D	BnaCnng19210D protein. (606 aa)
	BnaCnng22700D	BnaCnng22700D protein. (449 aa)
	BnaCnng22750D	BnaCnng22750D protein. (713 aa)
	BnaCnng27820D	BnaCnng27820D protein. (931 aa)
	BnaA04g27370D	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (228 aa)
	BnaC05g51090D	BnaC05g51090D protein. (1152 aa)
	BnaA09g51690D	BnaA09g51690D protein. (192 aa)
	BnaAnng20310D	BnaAnng20310D protein. (196 aa)
	BnaCnng51790D	BnaCnng51790D protein. (89 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA04g27370D	BnaA06g10160D	A0A078J1H7	A0A078HIE8	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaA06g10160D protein.	0.935
BnaA04g27370D	BnaA07g12530D	A0A078J1H7	A0A078I585	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.979
BnaA04g27370D	BnaA08g13850D	A0A078J1H7	A0A078FMZ1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaA08g13850D protein.	0.996
BnaA04g27370D	BnaA09g51690D	A0A078J1H7	A0A078J2A6	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaA09g51690D protein.	0.992
BnaA04g27370D	BnaAnng09360D	A0A078J1H7	A0A078IEV4	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaAnng09360D protein.	0.974
BnaA04g27370D	BnaAnng20310D	A0A078J1H7	A0A078JC57	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaAnng20310D protein.	0.994
BnaA04g27370D	BnaC02g06840D	A0A078J1H7	A0A078HLA1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaC02g06840D protein.	0.979
BnaA04g27370D	BnaC03g30050D	A0A078J1H7	A0A078G7D6	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaC03g30050D protein.	0.984
BnaA04g27370D	BnaC05g40110D	A0A078J1H7	A0A078GG76	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaC05g40110D protein.	0.990
BnaA04g27370D	BnaC05g51090D	A0A078J1H7	A0A078J272	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaC05g51090D protein.	0.982
BnaA04g27370D	BnaC06g12430D	A0A078J1H7	A0A078IE17	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaC06g12430D protein.	0.995
BnaA04g27370D	BnaC09g12750D	A0A078J1H7	A0A078F4I0	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaC09g12750D protein.	0.993
BnaA04g27370D	BnaC09g42100D	A0A078J1H7	A0A078GP75	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaC09g42100D protein.	0.994
BnaA04g27370D	BnaC09g47550D	A0A078J1H7	A0A078G972	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.995
BnaA04g27370D	BnaCnng19210D	A0A078J1H7	A0A078ILX2	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaCnng19210D protein.	0.991
BnaA04g27370D	BnaCnng22700D	A0A078J1H7	A0A078INF8	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaCnng22700D protein.	0.973
BnaA04g27370D	BnaCnng22750D	A0A078J1H7	A0A078IRX2	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaCnng22750D protein.	0.988
BnaA04g27370D	BnaCnng27820D	A0A078J1H7	A0A078IXL4	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaCnng27820D protein.	0.979
BnaA04g27370D	BnaCnng51790D	A0A078J1H7	A0A078JJN1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	BnaCnng51790D protein.	0.954
BnaA06g10160D	BnaA04g27370D	A0A078HIE8	A0A078J1H7	BnaA06g10160D protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.935