27 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC07g33050D	BnaC07g33050D protein. (215 aa)
	BnaA05g26940D	BnaA05g26940D protein. (659 aa)
	BnaA08g29050D	BnaA08g29050D protein. (466 aa)
	BnaA02g11530D	BnaA02g11530D protein. (358 aa)
	BnaA01g18460D	BnaA01g18460D protein. (220 aa)
	BnaC04g02010D	BnaC04g02010D protein. (377 aa)
	BnaC09g42480D	BnaC09g42480D protein. (352 aa)
	BnaA04g13340D	BnaA04g13340D protein. (299 aa)
	BnaC07g32770D	BnaC07g32770D protein. (515 aa)
	BnaC05g21790D	BnaC05g21790D protein. (194 aa)
	BnaA10g11950D	BnaA10g11950D protein. (476 aa)
	BnaA07g00910D	BnaA07g00910D protein. (529 aa)
	BnaCnng07760D	BnaCnng07760D protein. (134 aa)
	BnaC01g10200D	BnaC01g10200D protein. (1817 aa)
	BnaC03g33930D	BnaC03g33930D protein. (663 aa)
	BnaC09g33840D	BnaC09g33840D protein. (474 aa)
	BnaA05g20610D	BnaA05g20610D protein. (474 aa)
	BnaA03g59520D	BnaA03g59520D protein. (320 aa)
	BnaC03g74200D	BnaC03g74200D protein. (162 aa)
	BnaCnng38860D	BnaCnng38860D protein. (459 aa)
	BnaC01g43850D	BnaC01g43850D protein. (227 aa)
	BnaCnng52450D	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (425 aa)
	BnaCnng53950D	BnaCnng53950D protein. (167 aa)
	BnaAnng24120D	BnaAnng24120D protein. (201 aa)
	BnaUnng02660D	BnaUnng02660D protein. (131 aa)
	BnaCnng64300D	BnaCnng64300D protein. (46 aa)
	BnaCnng62650D	BnaCnng62650D protein. (385 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g18460D	BnaA02g11530D	A0A078GE43	A0A078FTT6	BnaA01g18460D protein.	BnaA02g11530D protein.	0.573
BnaA01g18460D	BnaA03g59520D	A0A078GE43	A0A078IWN1	BnaA01g18460D protein.	BnaA03g59520D protein.	0.573
BnaA01g18460D	BnaA04g13340D	A0A078GE43	A0A078GKG5	BnaA01g18460D protein.	BnaA04g13340D protein.	0.733
BnaA01g18460D	BnaA05g20610D	A0A078GE43	A0A078IA20	BnaA01g18460D protein.	BnaA05g20610D protein.	0.573
BnaA01g18460D	BnaA05g26940D	A0A078GE43	A0A078F9K1	BnaA01g18460D protein.	BnaA05g26940D protein.	0.603
BnaA01g18460D	BnaA08g29050D	A0A078GE43	A0A078FR80	BnaA01g18460D protein.	BnaA08g29050D protein.	0.476
BnaA01g18460D	BnaA10g11950D	A0A078GE43	A0A078H657	BnaA01g18460D protein.	BnaA10g11950D protein.	0.733
BnaA01g18460D	BnaAnng24120D	A0A078GE43	A0A078JPR1	BnaA01g18460D protein.	BnaAnng24120D protein.	0.573
BnaA01g18460D	BnaC01g43850D	A0A078GE43	A0A078JCF0	BnaA01g18460D protein.	BnaC01g43850D protein.	0.573
BnaA01g18460D	BnaC03g33930D	A0A078GE43	A0A078HS62	BnaA01g18460D protein.	BnaC03g33930D protein.	0.872
BnaA01g18460D	BnaC04g02010D	A0A078GE43	A0A078GEN0	BnaA01g18460D protein.	BnaC04g02010D protein.	0.770
BnaA01g18460D	BnaC07g32770D	A0A078GE43	A0A078GU84	BnaA01g18460D protein.	BnaC07g32770D protein.	0.573
BnaA01g18460D	BnaC09g33840D	A0A078GE43	A0A078I2N5	BnaA01g18460D protein.	BnaC09g33840D protein.	0.733
BnaA01g18460D	BnaCnng38860D	A0A078GE43	A0A078JBY1	BnaA01g18460D protein.	BnaCnng38860D protein.	0.476
BnaA01g18460D	BnaCnng52450D	A0A078GE43	A0A078JJE7	BnaA01g18460D protein.	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	0.573
BnaA01g18460D	BnaCnng53950D	A0A078GE43	A0A078JPA1	BnaA01g18460D protein.	BnaCnng53950D protein.	0.573
BnaA01g18460D	BnaCnng62650D	A0A078GE43	A0A078JUR6	BnaA01g18460D protein.	BnaCnng62650D protein.	0.573
BnaA01g18460D	BnaCnng64300D	A0A078GE43	A0A078JRX0	BnaA01g18460D protein.	BnaCnng64300D protein.	0.733
BnaA02g11530D	BnaA01g18460D	A0A078FTT6	A0A078GE43	BnaA02g11530D protein.	BnaA01g18460D protein.	0.573
BnaA02g11530D	BnaA04g13340D	A0A078FTT6	A0A078GKG5	BnaA02g11530D protein.	BnaA04g13340D protein.	0.625