17 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC07g33050D	BnaC07g33050D protein. (215 aa)
	BnaA05g26940D	BnaA05g26940D protein. (659 aa)
	BnaA02g11530D	BnaA02g11530D protein. (358 aa)
	BnaC04g02010D	BnaC04g02010D protein. (377 aa)
	BnaC09g42480D	BnaC09g42480D protein. (352 aa)
	BnaA04g13340D	BnaA04g13340D protein. (299 aa)
	BnaC07g32770D	BnaC07g32770D protein. (515 aa)
	BnaC05g21790D	BnaC05g21790D protein. (194 aa)
	BnaA10g11950D	BnaA10g11950D protein. (476 aa)
	BnaC01g10200D	BnaC01g10200D protein. (1817 aa)
	BnaC03g33930D	BnaC03g33930D protein. (663 aa)
	BnaC09g33840D	BnaC09g33840D protein. (474 aa)
	BnaA05g20610D	BnaA05g20610D protein. (474 aa)
	BnaA03g59520D	BnaA03g59520D protein. (320 aa)
	BnaC03g74200D	BnaC03g74200D protein. (162 aa)
	BnaAnng24120D	BnaAnng24120D protein. (201 aa)
	BnaCnng64300D	BnaCnng64300D protein. (46 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA02g11530D	BnaA04g13340D	A0A078FTT6	A0A078GKG5	BnaA02g11530D protein.	BnaA04g13340D protein.	0.625
BnaA02g11530D	BnaA05g26940D	A0A078FTT6	A0A078F9K1	BnaA02g11530D protein.	BnaA05g26940D protein.	0.564
BnaA02g11530D	BnaA10g11950D	A0A078FTT6	A0A078H657	BnaA02g11530D protein.	BnaA10g11950D protein.	0.625
BnaA02g11530D	BnaC01g10200D	A0A078FTT6	A0A078HL70	BnaA02g11530D protein.	BnaC01g10200D protein.	0.573
BnaA02g11530D	BnaC03g33930D	A0A078FTT6	A0A078HS62	BnaA02g11530D protein.	BnaC03g33930D protein.	0.870
BnaA02g11530D	BnaC03g74200D	A0A078FTT6	A0A078JBS1	BnaA02g11530D protein.	BnaC03g74200D protein.	0.573
BnaA02g11530D	BnaC04g02010D	A0A078FTT6	A0A078GEN0	BnaA02g11530D protein.	BnaC04g02010D protein.	0.809
BnaA02g11530D	BnaC05g21790D	A0A078FTT6	A0A078H1W0	BnaA02g11530D protein.	BnaC05g21790D protein.	0.573
BnaA02g11530D	BnaC07g33050D	A0A078FTT6	A0A078F8T2	BnaA02g11530D protein.	BnaC07g33050D protein.	0.573
BnaA02g11530D	BnaC09g33840D	A0A078FTT6	A0A078I2N5	BnaA02g11530D protein.	BnaC09g33840D protein.	0.625
BnaA02g11530D	BnaC09g42480D	A0A078FTT6	A0A078GIU8	BnaA02g11530D protein.	BnaC09g42480D protein.	0.573
BnaA02g11530D	BnaCnng64300D	A0A078FTT6	A0A078JRX0	BnaA02g11530D protein.	BnaCnng64300D protein.	0.625
BnaA03g59520D	BnaA04g13340D	A0A078IWN1	A0A078GKG5	BnaA03g59520D protein.	BnaA04g13340D protein.	0.625
BnaA03g59520D	BnaA05g26940D	A0A078IWN1	A0A078F9K1	BnaA03g59520D protein.	BnaA05g26940D protein.	0.564
BnaA03g59520D	BnaA10g11950D	A0A078IWN1	A0A078H657	BnaA03g59520D protein.	BnaA10g11950D protein.	0.625
BnaA03g59520D	BnaC01g10200D	A0A078IWN1	A0A078HL70	BnaA03g59520D protein.	BnaC01g10200D protein.	0.573
BnaA03g59520D	BnaC03g33930D	A0A078IWN1	A0A078HS62	BnaA03g59520D protein.	BnaC03g33930D protein.	0.870
BnaA03g59520D	BnaC03g74200D	A0A078IWN1	A0A078JBS1	BnaA03g59520D protein.	BnaC03g74200D protein.	0.573
BnaA03g59520D	BnaC04g02010D	A0A078IWN1	A0A078GEN0	BnaA03g59520D protein.	BnaC04g02010D protein.	0.809
BnaA03g59520D	BnaC05g21790D	A0A078IWN1	A0A078H1W0	BnaA03g59520D protein.	BnaC05g21790D protein.	0.573