(52 nodes) Mixed, incl. Polyketide cyclase/dehydrase, and Peptidyl-threonine dephosphorylation network (Brassica napus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA05g27660D	BnaA05g27660D protein. (393 aa)
	BnaA03g17720D	BnaA03g17720D protein. (207 aa)
	BnaC03g54810D	BnaC03g54810D protein. (346 aa)
	BnaC05g05180D	BnaC05g05180D protein. (430 aa)
	BnaC07g16480D	BnaC07g16480D protein; Belongs to the protein kinase superfamily. (362 aa)
	BnaA09g40690D	BnaA09g40690D protein. (188 aa)
	BnaA08g14490D	BnaA08g14490D protein. (422 aa)
	BnaA01g23280D	BnaA01g23280D protein. (59 aa)
	BnaA04g21960D	BnaA04g21960D protein. (204 aa)
	BnaC05g08410D	BnaC05g08410D protein; Belongs to the protein kinase superfamily. (415 aa)
	BnaA08g25520D	BnaA08g25520D protein; Belongs to the protein kinase superfamily. (354 aa)
	BnaC09g47390D	BnaC09g47390D protein; Belongs to the protein kinase superfamily. (377 aa)
	BnaC03g23260D	BnaC03g23260D protein. (205 aa)
	BnaC07g31800D	BnaC07g31800D protein; Belongs to the protein kinase superfamily. (361 aa)
	BnaC03g22610D	BnaC03g22610D protein. (213 aa)
	BnaA06g11830D	BnaA06g11830D protein. (496 aa)
	BnaC05g09360D	BnaC05g09360D protein. (586 aa)
	BnaA10g12140D	BnaA10g12140D protein. (395 aa)
	BnaA09g47860D	BnaA09g47860D protein; Belongs to the protein kinase superfamily. (357 aa)
	BnaC08g42270D	BnaC08g42270D protein; Belongs to the protein kinase superfamily. (361 aa)
	BnaC06g06590D	BnaC06g06590D protein; Belongs to the PP2C family. (250 aa)
	BnaA03g13020D	BnaA03g13020D protein. (406 aa)
	BnaA04g13420D	BnaA04g13420D protein; Belongs to the protein kinase superfamily. (341 aa)
	BnaC04g14090D	BnaC04g14090D protein. (366 aa)
	BnaA06g22800D	BnaA06g22800D protein; Belongs to the protein kinase superfamily. (357 aa)
	BnaA03g47830D	BnaA03g47830D protein. (413 aa)
	BnaAnng07530D	BnaAnng07530D protein. (404 aa)
	BnaA01g23120D	BnaA01g23120D protein; Belongs to the protein kinase superfamily. (352 aa)
	BnaA05g12650D	BnaA05g12650D protein. (366 aa)
	BnaA02g16230D	BnaA02g16230D protein. (205 aa)
	BnaC04g24820D	BnaC04g24820D protein. (290 aa)
	BnaC05g13670D	BnaC05g13670D protein. (501 aa)
	BnaC08g12090D	BnaC08g12090D protein. (171 aa)
	BnaC08g12100D	BnaC08g12100D protein. (410 aa)
	BnaC02g46310D	BnaC02g46310D protein. (49 aa)
	BnaC04g52290D	BnaC04g52290D protein. (274 aa)
	BnaC09g53650D	BnaC09g53650D protein. (423 aa)
	BnaAnng13200D	BnaAnng13200D protein. (208 aa)
	BnaC07g48850D	BnaC07g48850D protein. (166 aa)
	BnaA06g40360D	BnaA06g40360D protein. (210 aa)
	BnaCnng41320D	BnaCnng41320D protein. (354 aa)
	BnaA10g28780D	BnaA10g28780D protein. (302 aa)
	BnaA01g34560D	BnaA01g34560D protein. (201 aa)
	BnaA01g37370D	BnaA01g37370D protein. (371 aa)
	BnaAnng23920D	BnaAnng23920D protein. (371 aa)
	BnaAnng26820D	BnaAnng26820D protein. (191 aa)
	BnaAnng26730D	BnaAnng26730D protein. (111 aa)
	BnaCnng65400D	BnaCnng65400D protein. (191 aa)
	BnaAnng35310D	BnaAnng35310D protein. (186 aa)
	BnaAnng40650D	BnaAnng40650D protein. (203 aa)
	BnaAnng41460D	BnaAnng41460D protein; Belongs to the protein kinase superfamily. (289 aa)
	ABI2.1	ABA insensitive PP2C protein 2. (422 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABI2.1	BnaA01g23120D	X2C546	A0A078I5T5	ABA insensitive PP2C protein 2.	BnaA01g23120D protein; Belongs to the protein kinase superfamily.	0.549
ABI2.1	BnaA01g34560D	X2C546	A0A078JNB9	ABA insensitive PP2C protein 2.	BnaA01g34560D protein.	0.577
ABI2.1	BnaA02g16230D	X2C546	A0A078IB05	ABA insensitive PP2C protein 2.	BnaA02g16230D protein.	0.800
ABI2.1	BnaA03g17720D	X2C546	A0A078F3W8	ABA insensitive PP2C protein 2.	BnaA03g17720D protein.	0.527
ABI2.1	BnaA04g13420D	X2C546	A0A078HMT7	ABA insensitive PP2C protein 2.	BnaA04g13420D protein; Belongs to the protein kinase superfamily.	0.549
ABI2.1	BnaA04g21960D	X2C546	A0A078FZA9	ABA insensitive PP2C protein 2.	BnaA04g21960D protein.	0.527
ABI2.1	BnaA06g22800D	X2C546	A0A078HUP8	ABA insensitive PP2C protein 2.	BnaA06g22800D protein; Belongs to the protein kinase superfamily.	0.549
ABI2.1	BnaA06g40360D	X2C546	A0A078J5Y7	ABA insensitive PP2C protein 2.	BnaA06g40360D protein.	0.860
ABI2.1	BnaA09g40690D	X2C546	A0A078FHE3	ABA insensitive PP2C protein 2.	BnaA09g40690D protein.	0.944
ABI2.1	BnaA09g47860D	X2C546	A0A078H8N9	ABA insensitive PP2C protein 2.	BnaA09g47860D protein; Belongs to the protein kinase superfamily.	0.519
ABI2.1	BnaA10g28780D	X2C546	A0A078JGC7	ABA insensitive PP2C protein 2.	BnaA10g28780D protein.	0.480
ABI2.1	BnaAnng07530D	X2C546	A0A078I3P1	ABA insensitive PP2C protein 2.	BnaAnng07530D protein.	0.523
ABI2.1	BnaAnng13200D	X2C546	A0A078IWT1	ABA insensitive PP2C protein 2.	BnaAnng13200D protein.	0.527
ABI2.1	BnaAnng26730D	X2C546	A0A078JSB2	ABA insensitive PP2C protein 2.	BnaAnng26730D protein.	0.577
ABI2.1	BnaAnng26820D	X2C546	A0A078JRQ7	ABA insensitive PP2C protein 2.	BnaAnng26820D protein.	0.860
ABI2.1	BnaAnng35310D	X2C546	A0A078JWT0	ABA insensitive PP2C protein 2.	BnaAnng35310D protein.	0.762
ABI2.1	BnaAnng40650D	X2C546	A0A078JXH0	ABA insensitive PP2C protein 2.	BnaAnng40650D protein.	0.885
ABI2.1	BnaAnng41460D	X2C546	A0A078K0T7	ABA insensitive PP2C protein 2.	BnaAnng41460D protein; Belongs to the protein kinase superfamily.	0.936
ABI2.1	BnaC03g22610D	X2C546	A0A078GHR1	ABA insensitive PP2C protein 2.	BnaC03g22610D protein.	0.774
ABI2.1	BnaC03g23260D	X2C546	A0A078GAY3	ABA insensitive PP2C protein 2.	BnaC03g23260D protein.	0.800