(12 nodes) Mixed, incl. PPM-type phosphatase, divalent cation binding, and Polyketide cyclase / dehydrase and lipid transport network (Brassica napus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC05g05180D	BnaC05g05180D protein. (430 aa)
	BnaC09g47390D	BnaC09g47390D protein; Belongs to the protein kinase superfamily. (377 aa)
	BnaA06g11830D	BnaA06g11830D protein. (496 aa)
	BnaA03g13020D	BnaA03g13020D protein. (406 aa)
	BnaC04g14090D	BnaC04g14090D protein. (366 aa)
	BnaA06g22800D	BnaA06g22800D protein; Belongs to the protein kinase superfamily. (357 aa)
	BnaAnng07530D	BnaAnng07530D protein. (404 aa)
	BnaA01g23120D	BnaA01g23120D protein; Belongs to the protein kinase superfamily. (352 aa)
	BnaA05g12650D	BnaA05g12650D protein. (366 aa)
	BnaA01g34560D	BnaA01g34560D protein. (201 aa)
	BnaAnng26730D	BnaAnng26730D protein. (111 aa)
	BnaCnng65400D	BnaCnng65400D protein. (191 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g23120D	BnaA03g13020D	A0A078I5T5	A0A078HLV2	BnaA01g23120D protein; Belongs to the protein kinase superfamily.	BnaA03g13020D protein.	0.915
BnaA01g23120D	BnaA05g12650D	A0A078I5T5	A0A078I6B8	BnaA01g23120D protein; Belongs to the protein kinase superfamily.	BnaA05g12650D protein.	0.916
BnaA01g23120D	BnaA06g11830D	A0A078I5T5	A0A078GLW4	BnaA01g23120D protein; Belongs to the protein kinase superfamily.	BnaA06g11830D protein.	0.934
BnaA01g23120D	BnaAnng07530D	A0A078I5T5	A0A078I3P1	BnaA01g23120D protein; Belongs to the protein kinase superfamily.	BnaAnng07530D protein.	0.681
BnaA01g23120D	BnaC04g14090D	A0A078I5T5	A0A078HR64	BnaA01g23120D protein; Belongs to the protein kinase superfamily.	BnaC04g14090D protein.	0.916
BnaA01g23120D	BnaC05g05180D	A0A078I5T5	A0A078F6X0	BnaA01g23120D protein; Belongs to the protein kinase superfamily.	BnaC05g05180D protein.	0.920
BnaA01g34560D	BnaA03g13020D	A0A078JNB9	A0A078HLV2	BnaA01g34560D protein.	BnaA03g13020D protein.	0.914
BnaA01g34560D	BnaA05g12650D	A0A078JNB9	A0A078I6B8	BnaA01g34560D protein.	BnaA05g12650D protein.	0.910
BnaA01g34560D	BnaA06g11830D	A0A078JNB9	A0A078GLW4	BnaA01g34560D protein.	BnaA06g11830D protein.	0.949
BnaA01g34560D	BnaAnng07530D	A0A078JNB9	A0A078I3P1	BnaA01g34560D protein.	BnaAnng07530D protein.	0.756
BnaA01g34560D	BnaC04g14090D	A0A078JNB9	A0A078HR64	BnaA01g34560D protein.	BnaC04g14090D protein.	0.910
BnaA01g34560D	BnaC05g05180D	A0A078JNB9	A0A078F6X0	BnaA01g34560D protein.	BnaC05g05180D protein.	0.916
BnaA03g13020D	BnaA01g23120D	A0A078HLV2	A0A078I5T5	BnaA03g13020D protein.	BnaA01g23120D protein; Belongs to the protein kinase superfamily.	0.915
BnaA03g13020D	BnaA01g34560D	A0A078HLV2	A0A078JNB9	BnaA03g13020D protein.	BnaA01g34560D protein.	0.914
BnaA03g13020D	BnaA06g22800D	A0A078HLV2	A0A078HUP8	BnaA03g13020D protein.	BnaA06g22800D protein; Belongs to the protein kinase superfamily.	0.915
BnaA03g13020D	BnaAnng07530D	A0A078HLV2	A0A078I3P1	BnaA03g13020D protein.	BnaAnng07530D protein.	0.507
BnaA03g13020D	BnaAnng26730D	A0A078HLV2	A0A078JSB2	BnaA03g13020D protein.	BnaAnng26730D protein.	0.914
BnaA03g13020D	BnaC09g47390D	A0A078HLV2	A0A078GA33	BnaA03g13020D protein.	BnaC09g47390D protein; Belongs to the protein kinase superfamily.	0.915
BnaA03g13020D	BnaCnng65400D	A0A078HLV2	A0A078JW86	BnaA03g13020D protein.	BnaCnng65400D protein.	0.825
BnaA05g12650D	BnaA01g23120D	A0A078I6B8	A0A078I5T5	BnaA05g12650D protein.	BnaA01g23120D protein; Belongs to the protein kinase superfamily.	0.916