(99 nodes) Mixed, incl. Phloem protein 2, and Spartin-like network (Brassica napus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA02g26350D	BnaA02g26350D protein. (292 aa)
	BnaA02g26300D	BnaA02g26300D protein. (317 aa)
	BnaA05g13400D	BnaA05g13400D protein. (149 aa)
	BnaC03g62860D	BnaC03g62860D protein. (250 aa)
	BnaA02g26280D	BnaA02g26280D protein. (266 aa)
	BnaA02g26310D	BnaA02g26310D protein. (248 aa)
	BnaC05g29930D	BnaC05g29930D protein. (262 aa)
	BnaC05g03920D	BnaC05g03920D protein. (352 aa)
	BnaA02g26320D	BnaA02g26320D protein. (270 aa)
	BnaA02g26270D	BnaA02g26270D protein. (304 aa)
	BnaA02g13750D	BnaA02g13750D protein. (231 aa)
	BnaA03g51410D	BnaA03g51410D protein. (178 aa)
	BnaA04g12060D	BnaA04g12060D protein. (286 aa)
	BnaA06g34190D	BnaA06g34190D protein. (286 aa)
	BnaC02g34420D	BnaC02g34420D protein. (332 aa)
	BnaA08g02710D	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (151 aa)
	BnaA10g10330D	BnaA10g10330D protein. (157 aa)
	BnaA06g34180D	BnaA06g34180D protein. (283 aa)
	BnaA06g34780D	BnaA06g34780D protein. (205 aa)
	BnaA06g34200D	BnaA06g34200D protein. (295 aa)
	BnaC04g02750D	BnaC04g02750D protein. (311 aa)
	BnaA02g08850D	BnaA02g08850D protein. (81 aa)
	BnaC04g36450D	BnaC04g36450D protein. (175 aa)
	BnaC02g24050D	BnaC02g24050D protein. (321 aa)
	BnaA01g29050D	BnaA01g29050D protein. (357 aa)
	BnaA09g02630D	BnaA09g02630D protein. (255 aa)
	BnaA01g33970D	BnaA01g33970D protein. (316 aa)
	BnaC09g01080D	BnaC09g01080D protein. (221 aa)
	BnaC03g22990D	WAT1-related protein. (175 aa)
	BnaA01g18550D	BnaA01g18550D protein. (369 aa)
	BnaA08g12120D	BnaA08g12120D protein. (310 aa)
	BnaA08g12680D	BnaA08g12680D protein. (195 aa)
	BnaA05g30950D	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (205 aa)
	BnaC09g39790D	BnaC09g39790D protein. (92 aa)
	BnaA01g05940D	BnaA01g05940D protein. (188 aa)
	BnaC07g16800D	BnaC07g16800D protein. (338 aa)
	BnaA04g16420D	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (181 aa)
	BnaA04g24850D	BnaA04g24850D protein. (307 aa)
	BnaC03g42200D	BnaC03g42200D protein. (248 aa)
	BnaC03g59530D	BnaC03g59530D protein. (215 aa)
	BnaA09g48130D	BnaA09g48130D protein. (166 aa)
	BnaA09g18040D	BnaA09g18040D protein. (157 aa)
	BnaC07g20940D	BnaC07g20940D protein. (206 aa)
	BnaA01g32340D	BnaA01g32340D protein. (231 aa)
	BnaA08g19370D	BnaA08g19370D protein. (247 aa)
	BnaC03g67690D	BnaC03g67690D protein. (182 aa)
	BnaAnng04960D	BnaAnng04960D protein. (358 aa)
	BnaA05g19620D	BnaA05g19620D protein. (380 aa)
	BnaC05g15400D	BnaC05g15400D protein. (421 aa)
	BnaC05g10910D	OBERON-like protein; Probable transcription factor. (730 aa)
	BnaC06g40720D	BnaC06g40720D protein. (256 aa)
	BnaA09g38320D	BnaA09g38320D protein. (296 aa)
	BnaC04g22230D	BnaC04g22230D protein. (320 aa)
	BnaA02g29910D	BnaA02g29910D protein. (251 aa)
	BnaC05g30690D	BnaC05g30690D protein. (380 aa)
	BnaC03g16180D	BnaC03g16180D protein. (278 aa)
	BnaA07g12710D	BnaA07g12710D protein. (335 aa)
	BnaA02g18100D	BnaA02g18100D protein. (320 aa)
	BnaC04g24930D	BnaC04g24930D protein. (270 aa)
	BnaC07g41850D	BnaC07g41850D protein. (454 aa)
	BnaA04g14360D	BnaA04g14360D protein. (176 aa)
	BnaA08g19970D	BnaA08g19970D protein. (412 aa)
	BnaAnng09150D	BnaAnng09150D protein. (344 aa)
	BnaC02g43170D	BnaC02g43170D protein. (678 aa)
	BnaA09g26800D	BnaA09g26800D protein. (135 aa)
	BnaA03g36350D	BnaA03g36350D protein. (268 aa)
	BnaC01g22450D	BnaC01g22450D protein. (370 aa)
	BnaC03g67090D	BnaC03g67090D protein. (310 aa)
	BnaA06g37730D	BnaA06g37730D protein. (390 aa)
	BnaA10g03540D	BnaA10g03540D protein. (360 aa)
	BnaC01g41230D	BnaC01g41230D protein. (223 aa)
	BnaCnng21550D	BnaCnng21550D protein. (156 aa)
	BnaC04g02580D	BnaC04g02580D protein. (325 aa)
	BnaCnng30500D	BnaCnng30500D protein. (188 aa)
	BnaC07g50000D	BnaC07g50000D protein. (285 aa)
	BnaC02g47810D	BnaC02g47810D protein. (249 aa)
	BnaCnng37830D	BnaCnng37830D protein. (136 aa)
	BnaA08g31260D	BnaA08g31260D protein. (408 aa)
	BnaCnng46350D	BnaCnng46350D protein. (395 aa)
	BnaC02g45680D	BnaC02g45680D protein. (258 aa)
	BnaC02g47870D	BnaC02g47870D protein. (226 aa)
	BnaC02g47880D	BnaC02g47880D protein. (432 aa)
	BnaUnng01480D	BnaUnng01480D protein. (78 aa)
	BnaCnng51420D	BnaCnng51420D protein. (269 aa)
	BnaC08g48470D	BnaC08g48470D protein. (150 aa)
	BnaCnng61750D	BnaCnng61750D protein. (157 aa)
	BnaCnng61350D	BnaCnng61350D protein. (316 aa)
	BnaUnng03010D	BnaUnng03010D protein. (173 aa)
	BnaA01g34970D	BnaA01g34970D protein. (221 aa)
	BnaCnng67580D	BnaCnng67580D protein. (284 aa)
	BnaCnng59700D	BnaCnng59700D protein. (386 aa)
	BnaC02g47790D	BnaC02g47790D protein. (266 aa)
	BnaCnng63620D	BnaCnng63620D protein. (325 aa)
	BnaCnng64270D	BnaCnng64270D protein. (70 aa)
	BnaCnng64480D	BnaCnng64480D protein. (257 aa)
	BnaAnng31570D	BnaAnng31570D protein. (345 aa)
	BnaAnng39370D	BnaAnng39370D protein. (278 aa)
	BnaC06g42740D	BnaC06g42740D protein. (339 aa)
	BnaCnng69420D	BnaCnng69420D protein. (121 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g05940D	BnaA01g18550D	A0A078GNX3	A0A078GCZ3	BnaA01g05940D protein.	BnaA01g18550D protein.	0.411
BnaA01g05940D	BnaA01g34970D	A0A078GNX3	A0A078JRG4	BnaA01g05940D protein.	BnaA01g34970D protein.	0.453
BnaA01g05940D	BnaA02g26270D	A0A078GNX3	A0A078FBS1	BnaA01g05940D protein.	BnaA02g26270D protein.	0.464
BnaA01g05940D	BnaA02g26280D	A0A078GNX3	A0A078F8E8	BnaA01g05940D protein.	BnaA02g26280D protein.	0.420
BnaA01g05940D	BnaA02g26300D	A0A078GNX3	A0A078F4G0	BnaA01g05940D protein.	BnaA02g26300D protein.	0.468
BnaA01g05940D	BnaA02g26310D	A0A078GNX3	A0A078F8M5	BnaA01g05940D protein.	BnaA02g26310D protein.	0.475
BnaA01g05940D	BnaA02g26320D	A0A078GNX3	A0A078FBR8	BnaA01g05940D protein.	BnaA02g26320D protein.	0.422
BnaA01g05940D	BnaA02g26350D	A0A078GNX3	A0A078F4F4	BnaA01g05940D protein.	BnaA02g26350D protein.	0.487
BnaA01g05940D	BnaA04g12060D	A0A078GNX3	A0A078FN78	BnaA01g05940D protein.	BnaA04g12060D protein.	0.412
BnaA01g05940D	BnaA05g13400D	A0A078GNX3	A0A078F5E5	BnaA01g05940D protein.	BnaA05g13400D protein.	0.438
BnaA01g05940D	BnaA05g19620D	A0A078GNX3	A0A078HJH8	BnaA01g05940D protein.	BnaA05g19620D protein.	0.412
BnaA01g05940D	BnaA05g30950D	A0A078GNX3	A0A078GH53	BnaA01g05940D protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.486
BnaA01g05940D	BnaA06g34180D	A0A078GNX3	A0A078FWW9	BnaA01g05940D protein.	BnaA06g34180D protein.	0.457
BnaA01g05940D	BnaA06g34190D	A0A078GNX3	A0A078FSV6	BnaA01g05940D protein.	BnaA06g34190D protein.	0.485
BnaA01g05940D	BnaA06g34200D	A0A078GNX3	A0A078FX66	BnaA01g05940D protein.	BnaA06g34200D protein.	0.501
BnaA01g05940D	BnaA06g37730D	A0A078GNX3	A0A078ILZ4	BnaA01g05940D protein.	BnaA06g37730D protein.	0.438
BnaA01g05940D	BnaA08g12120D	A0A078GNX3	A0A078GD87	BnaA01g05940D protein.	BnaA08g12120D protein.	0.498
BnaA01g05940D	BnaA08g19970D	A0A078GNX3	A0A078IAZ7	BnaA01g05940D protein.	BnaA08g19970D protein.	0.419
BnaA01g05940D	BnaA09g18040D	A0A078GNX3	A0A078HBP3	BnaA01g05940D protein.	BnaA09g18040D protein.	0.470
BnaA01g05940D	BnaA09g38320D	A0A078GNX3	A0A078HWN9	BnaA01g05940D protein.	BnaA09g38320D protein.	0.426