31 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC03g64450D	BnaC03g64450D protein. (77 aa)
	BnaA03g01660D	BnaA03g01660D protein. (184 aa)
	BnaA08g04090D	BnaA08g04090D protein. (155 aa)
	BnaC09g37370D	BnaC09g37370D protein. (449 aa)
	BnaC05g02080D	BnaC05g02080D protein. (180 aa)
	BnaC03g65540D	BnaC03g65540D protein. (81 aa)
	BnaA06g34130D	BnaA06g34130D protein. (118 aa)
	BnaC03g69420D	BnaC03g69420D protein. (138 aa)
	BnaA05g18060D	BnaA05g18060D protein. (220 aa)
	BnaA02g25020D	BnaA02g25020D protein. (220 aa)
	BnaC05g31660D	BnaC05g31660D protein. (88 aa)
	BnaC03g63990D	BnaC03g63990D protein. (198 aa)
	BnaA09g27310D	BnaA09g27310D protein. (158 aa)
	BnaA06g11350D	BnaA06g11350D protein. (286 aa)
	BnaA01g30960D	BnaA01g30960D protein. (288 aa)
	BnaC05g12890D	BnaC05g12890D protein. (286 aa)
	BnaC05g43560D	BnaC05g43560D protein. (116 aa)
	BnaA08g20700D	BnaA08g20700D protein. (158 aa)
	BnaA05g15330D	BnaA05g15330D protein. (161 aa)
	BnaC04g22730D	BnaC04g22730D protein. (104 aa)
	BnaC05g50970D	BnaC05g50970D protein. (271 aa)
	BnaC06g24360D	BnaC06g24360D protein. (227 aa)
	BnaA02g04010D	BnaA02g04010D protein. (762 aa)
	BnaC01g44780D	BnaC01g44780D protein. (86 aa)
	BnaA03g58580D	BnaA03g58580D protein. (147 aa)
	BnaCnng40770D	BnaCnng40770D protein. (89 aa)
	BnaCnng46450D	BnaCnng46450D protein. (202 aa)
	BnaCnng65920D	BnaCnng65920D protein. (226 aa)
	BnaAnng35190D	BnaAnng35190D protein. (113 aa)
	BnaAnng40000D	BnaAnng40000D protein. (215 aa)
	BnaCnng73930D	BnaCnng73930D protein. (207 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g30960D	BnaA02g04010D	A0A078HEW8	A0A078IWB6	BnaA01g30960D protein.	BnaA02g04010D protein.	0.468
BnaA01g30960D	BnaA03g58580D	A0A078HEW8	A0A078J3V1	BnaA01g30960D protein.	BnaA03g58580D protein.	0.524
BnaA01g30960D	BnaA05g15330D	A0A078HEW8	A0A078I475	BnaA01g30960D protein.	BnaA05g15330D protein.	0.527
BnaA01g30960D	BnaA05g18060D	A0A078HEW8	A0A078GNK9	BnaA01g30960D protein.	BnaA05g18060D protein.	0.499
BnaA01g30960D	BnaA06g11350D	A0A078HEW8	A0A078H9L6	BnaA01g30960D protein.	BnaA06g11350D protein.	0.482
BnaA01g30960D	BnaA08g04090D	A0A078HEW8	A0A078FRF9	BnaA01g30960D protein.	BnaA08g04090D protein.	0.473
BnaA01g30960D	BnaA08g20700D	A0A078HEW8	A0A078HXI8	BnaA01g30960D protein.	BnaA08g20700D protein.	0.494
BnaA01g30960D	BnaA09g27310D	A0A078HEW8	A0A078H6B6	BnaA01g30960D protein.	BnaA09g27310D protein.	0.499
BnaA01g30960D	BnaAnng35190D	A0A078HEW8	A0A078JWQ9	BnaA01g30960D protein.	BnaAnng35190D protein.	0.515
BnaA01g30960D	BnaAnng40000D	A0A078HEW8	A0A078K0C7	BnaA01g30960D protein.	BnaAnng40000D protein.	0.448
BnaA01g30960D	BnaC01g44780D	A0A078HEW8	A0A078IXW9	BnaA01g30960D protein.	BnaC01g44780D protein.	0.530
BnaA01g30960D	BnaC03g63990D	A0A078HEW8	A0A078GY48	BnaA01g30960D protein.	BnaC03g63990D protein.	0.513
BnaA01g30960D	BnaC03g64450D	A0A078HEW8	A0A078CGR7	BnaA01g30960D protein.	BnaC03g64450D protein.	0.525
BnaA01g30960D	BnaC03g65540D	A0A078HEW8	A0A078FWK2	BnaA01g30960D protein.	BnaC03g65540D protein.	0.518
BnaA01g30960D	BnaC03g69420D	A0A078HEW8	A0A078GM97	BnaA01g30960D protein.	BnaC03g69420D protein.	0.490
BnaA01g30960D	BnaC04g22730D	A0A078HEW8	A0A078I6M8	BnaA01g30960D protein.	BnaC04g22730D protein.	0.516
BnaA01g30960D	BnaC05g02080D	A0A078HEW8	A0A078FUQ7	BnaA01g30960D protein.	BnaC05g02080D protein.	0.496
BnaA01g30960D	BnaC05g12890D	A0A078HEW8	A0A078HQX2	BnaA01g30960D protein.	BnaC05g12890D protein.	0.485
BnaA01g30960D	BnaC05g31660D	A0A078HEW8	A0A078GXF6	BnaA01g30960D protein.	BnaC05g31660D protein.	0.463
BnaA01g30960D	BnaC05g43560D	A0A078HEW8	A0A078HW56	BnaA01g30960D protein.	BnaC05g43560D protein.	0.506