34 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA07g24590D	BnaA07g24590D protein. (315 aa)
	BnaC07g13400D	BnaC07g13400D protein. (155 aa)
	BnaC06g00880D	BnaC06g00880D protein. (207 aa)
	BnaA08g14320D	BnaA08g14320D protein. (154 aa)
	BnaA10g09630D	BnaA10g09630D protein. (322 aa)
	BnaA09g47030D	BnaA09g47030D protein. (205 aa)
	BnaA09g46790D	BnaA09g46790D protein. (198 aa)
	BnaC08g15650D	BnaC08g15650D protein. (202 aa)
	BnaC09g28200D	BnaC09g28200D protein. (237 aa)
	BnaC03g15720D	BnaC03g15720D protein. (220 aa)
	BnaA01g23970D	BnaA01g23970D protein. (160 aa)
	BnaA04g14830D	BnaA04g14830D protein. (129 aa)
	BnaA04g14840D	BnaA04g14840D protein. (129 aa)
	BnaCnng08620D	BnaCnng08620D protein. (185 aa)
	BnaC06g30140D	BnaC06g30140D protein. (301 aa)
	BnaA02g17250D	BnaA02g17250D protein. (198 aa)
	BnaC01g34730D	BnaC01g34730D protein. (104 aa)
	BnaA04g13590D	BnaA04g13590D protein. (169 aa)
	BnaA09g28560D	BnaA09g28560D protein. (179 aa)
	BnaA02g13950D	BnaA02g13950D protein. (316 aa)
	BnaA03g48270D	BnaA03g48270D protein. (136 aa)
	BnaAnng09170D	BnaAnng09170D protein. (206 aa)
	BnaA09g10730D	BnaA09g10730D protein. (185 aa)
	BnaA08g30930D	BnaA08g30930D protein. (189 aa)
	BnaAnng13220D	BnaAnng13220D protein. (247 aa)
	BnaC04g53380D	BnaC04g53380D protein. (294 aa)
	BnaC06g43980D	BnaC06g43980D protein. (206 aa)
	BnaCnng49280D	BnaCnng49280D protein. (191 aa)
	BnaA02g35550D	BnaA02g35550D protein. (167 aa)
	BnaCnng67920D	BnaCnng67920D protein. (223 aa)
	BnaAnng36290D	BnaAnng36290D protein. (202 aa)
	BnaC07g48550D	BnaC07g48550D protein. (155 aa)
	BnaAnng34830D	BnaAnng34830D protein. (179 aa)
	BnaCnng75020D	BnaCnng75020D protein. (244 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g23970D	BnaA02g17250D	A0A078HAU6	A0A078HN95	BnaA01g23970D protein.	BnaA02g17250D protein.	0.435
BnaA01g23970D	BnaA02g35550D	A0A078HAU6	A0A078JHW3	BnaA01g23970D protein.	BnaA02g35550D protein.	0.535
BnaA01g23970D	BnaA04g13590D	A0A078HAU6	A0A078HQ91	BnaA01g23970D protein.	BnaA04g13590D protein.	0.523
BnaA01g23970D	BnaA08g14320D	A0A078HAU6	A0A078FMG0	BnaA01g23970D protein.	BnaA08g14320D protein.	0.460
BnaA01g23970D	BnaA09g28560D	A0A078HAU6	A0A078HXP8	BnaA01g23970D protein.	BnaA09g28560D protein.	0.653
BnaA01g23970D	BnaA09g47030D	A0A078HAU6	A0A078GMZ3	BnaA01g23970D protein.	BnaA09g47030D protein.	0.414
BnaA01g23970D	BnaC01g34730D	A0A078HAU6	A0A078HNQ7	BnaA01g23970D protein.	BnaC01g34730D protein.	0.418
BnaA01g23970D	BnaC06g30140D	A0A078HAU6	A0A078HLX3	BnaA01g23970D protein.	BnaC06g30140D protein.	0.428
BnaA01g23970D	BnaC07g13400D	A0A078HAU6	A0A078FDP3	BnaA01g23970D protein.	BnaC07g13400D protein.	0.538
BnaA01g23970D	BnaCnng08620D	A0A078HAU6	A0A078HK18	BnaA01g23970D protein.	BnaCnng08620D protein.	0.469
BnaA01g23970D	BnaCnng67920D	A0A078HAU6	A0A078JV94	BnaA01g23970D protein.	BnaCnng67920D protein.	0.533
BnaA02g13950D	BnaA04g14830D	A0A078I4B4	A0A078HD43	BnaA02g13950D protein.	BnaA04g14830D protein.	0.468
BnaA02g13950D	BnaA04g14840D	A0A078I4B4	A0A078HEY5	BnaA02g13950D protein.	BnaA04g14840D protein.	0.471
BnaA02g13950D	BnaA08g14320D	A0A078I4B4	A0A078FMG0	BnaA02g13950D protein.	BnaA08g14320D protein.	0.518
BnaA02g13950D	BnaA08g30930D	A0A078I4B4	A0A078ITG8	BnaA02g13950D protein.	BnaA08g30930D protein.	0.407
BnaA02g13950D	BnaA09g10730D	A0A078I4B4	A0A078IEC9	BnaA02g13950D protein.	BnaA09g10730D protein.	0.475
BnaA02g13950D	BnaA09g46790D	A0A078I4B4	A0A078GPP5	BnaA02g13950D protein.	BnaA09g46790D protein.	0.444
BnaA02g13950D	BnaA09g47030D	A0A078I4B4	A0A078GMZ3	BnaA02g13950D protein.	BnaA09g47030D protein.	0.503
BnaA02g13950D	BnaAnng34830D	A0A078I4B4	A0A078JYM0	BnaA02g13950D protein.	BnaAnng34830D protein.	0.488
BnaA02g13950D	BnaAnng36290D	A0A078I4B4	A0A078JXH9	BnaA02g13950D protein.	BnaAnng36290D protein.	0.465