46 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC09g21440D	Beta-amylase. (564 aa)
	BnaA03g18970D	BnaA03g18970D protein. (336 aa)
	BnaC07g33260D	BnaC07g33260D protein. (220 aa)
	BnaA05g27980D	BnaA05g27980D protein. (286 aa)
	BnaC07g34180D	Beta-amylase. (548 aa)
	BnaC06g30880D	BnaC06g30880D protein. (874 aa)
	BnaC03g14120D	Beta-amylase. (533 aa)
	BnaA05g10520D	BnaA05g10520D protein; Belongs to the FBPase class 1 family. (358 aa)
	BnaA09g07040D	4-alpha-glucanotransferase. (573 aa)
	BnaC04g05440D	BnaC04g05440D protein. (784 aa)
	BnaA02g08900D	Beta-amylase. (523 aa)
	BnaA09g04240D	BnaA09g04240D protein. (1179 aa)
	BnaC04g11560D	BnaC04g11560D protein; Belongs to the FBPase class 1 family. (324 aa)
	BnaC08g14540D	BnaC08g14540D protein. (1374 aa)
	BnaA08g25580D	BnaA08g25580D protein. (1372 aa)
	BnaA08g05660D	Beta-amylase. (498 aa)
	BnaA04g05650D	BnaA04g05650D protein. (377 aa)
	BnaC04g01600D	BnaC04g01600D protein. (941 aa)
	BnaA09g47750D	BnaA09g47750D protein. (1380 aa)
	BnaA03g19240D	BnaA03g19240D protein. (68 aa)
	BnaC01g21190D	Beta-amylase. (548 aa)
	BnaA03g11260D	Beta-amylase. (532 aa)
	BnaA07g28350D	BnaA07g28350D protein. (889 aa)
	BnaA01g17940D	Beta-amylase. (549 aa)
	BnaC08g10900D	Beta-amylase. (181 aa)
	BnaC02g43370D	BnaC02g43370D protein. (129 aa)
	BnaA05g36350D	BnaA05g36350D protein. (650 aa)
	BnaCnng20610D	BnaCnng20610D protein. (970 aa)
	BnaC03g72510D	BnaC03g72510D protein. (323 aa)
	BnaCnng27900D	BnaCnng27900D protein. (337 aa)
	BnaC01g44700D	BnaC01g44700D protein. (119 aa)
	BnaAnng16650D	BnaAnng16650D protein. (172 aa)
	BnaC08g46760D	BnaC08g46760D protein; Belongs to the FBPase class 1 family. (337 aa)
	BnaA08g29810D	BnaA08g29810D protein; Belongs to the FBPase class 1 family. (346 aa)
	BnaUnng01440D	BnaUnng01440D protein. (286 aa)
	BnaCnng53590D	BnaCnng53590D protein; Belongs to the FBPase class 1 family. (880 aa)
	BnaC02g48400D	BnaC02g48400D protein. (1315 aa)
	BnaC03g78310D	Beta-amylase. (334 aa)
	BnaC08g49610D	BnaC08g49610D protein. (1380 aa)
	BnaC03g78320D	Beta-amylase. (214 aa)
	BnaC03g71580D	Beta-amylase. (298 aa)
	BnaAnng25950D	BnaAnng25950D protein. (209 aa)
	BnaCnng71250D	Beta-amylase. (331 aa)
	BnaCnng71190D	Beta-amylase. (165 aa)
	BnaCnng67200D	BnaCnng67200D protein. (552 aa)
	BnaAnng41430D	BnaAnng41430D protein. (248 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g17940D	BnaA04g05650D	A0A078HWY0	A0A078GCW9	Beta-amylase.	BnaA04g05650D protein.	0.400
BnaA01g17940D	BnaA05g27980D	A0A078HWY0	A0A078F639	Beta-amylase.	BnaA05g27980D protein.	0.400
BnaA01g17940D	BnaA07g28350D	A0A078HWY0	A0A078HPN4	Beta-amylase.	BnaA07g28350D protein.	0.781
BnaA01g17940D	BnaA09g07040D	A0A078HWY0	A0A078G085	Beta-amylase.	4-alpha-glucanotransferase.	0.782
BnaA01g17940D	BnaAnng16650D	A0A078HWY0	A0A078J6G1	Beta-amylase.	BnaAnng16650D protein.	0.426
BnaA01g17940D	BnaAnng41430D	A0A078HWY0	A0A078K0S5	Beta-amylase.	BnaAnng41430D protein.	0.400
BnaA01g17940D	BnaC02g43370D	A0A078HWY0	A0A078IBU2	Beta-amylase.	BnaC02g43370D protein.	0.404
BnaA01g17940D	BnaC04g01600D	A0A078HWY0	A0A078GFG5	Beta-amylase.	BnaC04g01600D protein.	0.766
BnaA01g17940D	BnaC04g05440D	A0A078HWY0	A0A078G1U4	Beta-amylase.	BnaC04g05440D protein.	0.730
BnaA01g17940D	BnaC06g30880D	A0A078HWY0	A0A078FEH0	Beta-amylase.	BnaC06g30880D protein.	0.781
BnaA01g17940D	BnaCnng67200D	A0A078HWY0	A0A078JXJ1	Beta-amylase.	BnaCnng67200D protein.	0.790
BnaA01g17940D	BnaUnng01440D	A0A078HWY0	A0A078JFL3	Beta-amylase.	BnaUnng01440D protein.	0.400
BnaA02g08900D	BnaAnng16650D	A0A078G2K8	A0A078J6G1	Beta-amylase.	BnaAnng16650D protein.	0.403
BnaA02g08900D	BnaCnng67200D	A0A078G2K8	A0A078JXJ1	Beta-amylase.	BnaCnng67200D protein.	0.403
BnaA03g11260D	BnaAnng16650D	A0A078HEG9	A0A078J6G1	Beta-amylase.	BnaAnng16650D protein.	0.403
BnaA03g11260D	BnaCnng67200D	A0A078HEG9	A0A078JXJ1	Beta-amylase.	BnaCnng67200D protein.	0.403
BnaA03g19240D	BnaA04g05650D	A0A078HCE9	A0A078GCW9	BnaA03g19240D protein.	BnaA04g05650D protein.	0.552
BnaA03g19240D	BnaA05g27980D	A0A078HCE9	A0A078F639	BnaA03g19240D protein.	BnaA05g27980D protein.	0.416
BnaA03g19240D	BnaA05g36350D	A0A078HCE9	A0A078IFQ2	BnaA03g19240D protein.	BnaA05g36350D protein.	0.787
BnaA03g19240D	BnaA07g28350D	A0A078HCE9	A0A078HPN4	BnaA03g19240D protein.	BnaA07g28350D protein.	0.717