47 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GID1B	Gibberellin receptor 1B. (358 aa)
	BnaA05g27510D	BnaA05g27510D protein. (908 aa)
	BnaC05g05180D	BnaC05g05180D protein. (430 aa)
	BnaC09g40420D	BnaC09g40420D protein; Belongs to the GRAS family. (525 aa)
	BnaA02g12260D	BnaA02g12260D protein; Belongs to the GRAS family. (150 aa)
	BnaA09g20650D	BnaA09g20650D protein. (345 aa)
	BnaA06g34810D	BnaA06g34810D protein; Belongs to the GRAS family. (572 aa)
	BnaA01g23280D	BnaA01g23280D protein. (59 aa)
	BnaC05g02110D	BnaC05g02110D protein. (479 aa)
	BnaA01g26270D	BnaA01g26270D protein. (594 aa)
	BnaA09g02870D	BnaA09g02870D protein. (152 aa)
	BnaA01g28410D	BnaA01g28410D protein. (1133 aa)
	BnaC01g35670D	BnaC01g35670D protein. (1133 aa)
	BnaC03g40790D	BnaC03g40790D protein. (594 aa)
	BnaC03g22930D	BnaC03g22930D protein. (303 aa)
	BnaC05g34640D	BnaC05g34640D protein. (435 aa)
	BnaA07g02560D	BnaA07g02560D protein. (59 aa)
	BnaC04g01590D	BnaC04g01590D protein. (305 aa)
	BnaA05g32040D	BnaA05g32040D protein. (346 aa)
	BnaA09g35980D	BnaA09g35980D protein. (312 aa)
	BnaA09g28260D	BnaA09g28260D protein. (134 aa)
	BnaC07g16800D	BnaC07g16800D protein. (338 aa)
	BnaA01g18930D	BnaA01g18930D protein. (587 aa)
	BnaA09g50820D	BnaA09g50820D protein. (490 aa)
	BnaA03g19230D	BnaA03g19230D protein. (317 aa)
	BnaC07g20900D	BnaC07g20900D protein; Belongs to the GRAS family. (556 aa)
	BnaC06g06590D	BnaC06g06590D protein; Belongs to the PP2C family. (250 aa)
	BnaA10g17240D	BnaA10g17240D protein; Belongs to the GRAS family. (510 aa)
	BnaC05g46680D	BnaC05g46680D protein. (347 aa)
	BnaC01g22760D	BnaC01g22760D protein. (600 aa)
	BnaC06g01880D	BnaC06g01880D protein. (328 aa)
	BnaA05g32640D	BnaA05g32640D protein; Belongs to the GRAS family. (417 aa)
	BnaA05g32630D	BnaA05g32630D protein; Belongs to the GRAS family. (61 aa)
	BnaA07g12710D	BnaA07g12710D protein. (335 aa)
	BnaA02g29980D	BnaA02g29980D protein. (156 aa)
	BnaC05g47760D	BnaC05g47760D protein; Belongs to the GRAS family. (416 aa)
	BnaA02g34700D	BnaA02g34700D protein. (81 aa)
	BnaC07g49160D	BnaC07g49160D protein. (153 aa)
	BnaCnng28010D	BnaCnng28010D protein; Belongs to the GRAS family. (507 aa)
	BnaA09g52630D	BnaA09g52630D protein. (492 aa)
	BnaC09g53060D	BnaC09g53060D protein; Belongs to the GRAS family. (151 aa)
	BnaC09g52270D	BnaC09g52270D protein; Belongs to the GRAS family. (542 aa)
	BnaCnng55170D	BnaCnng55170D protein. (358 aa)
	BnaCnng53120D	BnaCnng53120D protein. (476 aa)
	BnaCnng76910D	BnaCnng76910D protein. (189 aa)
	BnaCnng68300D	BnaCnng68300D protein; Belongs to the GRAS family. (507 aa)
	BnaCnng69280D	BnaCnng69280D protein. (358 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g18930D	BnaA07g02560D	A0A078GYW0	A0A078GG22	BnaA01g18930D protein.	BnaA07g02560D protein.	0.540
BnaA01g18930D	BnaC01g22760D	A0A078GYW0	A0A078HWD1	BnaA01g18930D protein.	BnaC01g22760D protein.	0.543
BnaA01g28410D	BnaA02g34700D	A0A078G464	A0A078IQH0	BnaA01g28410D protein.	BnaA02g34700D protein.	0.528
BnaA02g12260D	BnaA05g27510D	A0A078FU95	A0A078F261	BnaA02g12260D protein; Belongs to the GRAS family.	BnaA05g27510D protein.	0.465
BnaA02g12260D	BnaA05g32040D	A0A078FU95	A0A078GMJ2	BnaA02g12260D protein; Belongs to the GRAS family.	BnaA05g32040D protein.	0.793
BnaA02g12260D	BnaA09g20650D	A0A078FU95	A0A078FV66	BnaA02g12260D protein; Belongs to the GRAS family.	BnaA09g20650D protein.	0.806
BnaA02g12260D	BnaC05g46680D	A0A078FU95	A0A078HW12	BnaA02g12260D protein; Belongs to the GRAS family.	BnaC05g46680D protein.	0.793
BnaA02g12260D	BnaCnng55170D	A0A078FU95	A0A078JIS8	BnaA02g12260D protein; Belongs to the GRAS family.	BnaCnng55170D protein.	0.722
BnaA02g12260D	BnaCnng69280D	A0A078FU95	A0A078JYC9	BnaA02g12260D protein; Belongs to the GRAS family.	BnaCnng69280D protein.	0.722
BnaA02g12260D	GID1B	A0A078FU95	E7E1L1	BnaA02g12260D protein; Belongs to the GRAS family.	Gibberellin receptor 1B.	0.722
BnaA02g29980D	BnaA05g27510D	A0A078IFE8	A0A078F261	BnaA02g29980D protein.	BnaA05g27510D protein.	0.463
BnaA02g29980D	BnaA05g32640D	A0A078IFE8	A0A078HZ07	BnaA02g29980D protein.	BnaA05g32640D protein; Belongs to the GRAS family.	0.417
BnaA02g29980D	BnaA06g34810D	A0A078IFE8	A0A078FY14	BnaA02g29980D protein.	BnaA06g34810D protein; Belongs to the GRAS family.	0.737
BnaA02g29980D	BnaA10g17240D	A0A078IFE8	A0A078HM39	BnaA02g29980D protein.	BnaA10g17240D protein; Belongs to the GRAS family.	0.403
BnaA02g29980D	BnaC05g47760D	A0A078IFE8	A0A078ILA8	BnaA02g29980D protein.	BnaC05g47760D protein; Belongs to the GRAS family.	0.700
BnaA02g29980D	BnaC07g20900D	A0A078IFE8	A0A078HEN8	BnaA02g29980D protein.	BnaC07g20900D protein; Belongs to the GRAS family.	0.485
BnaA02g29980D	BnaC09g40420D	A0A078IFE8	A0A078FR04	BnaA02g29980D protein.	BnaC09g40420D protein; Belongs to the GRAS family.	0.696
BnaA02g29980D	BnaC09g52270D	A0A078IFE8	A0A078JHF5	BnaA02g29980D protein.	BnaC09g52270D protein; Belongs to the GRAS family.	0.733
BnaA02g29980D	BnaCnng28010D	A0A078IFE8	A0A078IXQ0	BnaA02g29980D protein.	BnaCnng28010D protein; Belongs to the GRAS family.	0.701
BnaA02g29980D	BnaCnng68300D	A0A078IFE8	A0A078JY94	BnaA02g29980D protein.	BnaCnng68300D protein; Belongs to the GRAS family.	0.423