38 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SUMO5.1	Small ubiquitin-related modifier. (101 aa)
	BnaC03g72450D	BnaC03g72450D protein. (157 aa)
	BnaA09g39760D	BnaA04g27270D protein. (157 aa)
	BnaC04g11950D	BnaC04g11950D protein. (102 aa)
	BnaC04g11940D	Small ubiquitin-related modifier. (102 aa)
	BnaCnng04480D	BnaCnng04480D protein. (66 aa)
	BnaA08g14280D	Small ubiquitin-related modifier. (101 aa)
	BnaA10g09410D	Small ubiquitin-related modifier. (104 aa)
	BnaA10g09970D	BnaA10g09970D protein. (111 aa)
	BnaC07g12170D	BnaC07g12170D protein. (220 aa)
	BnaA02g09210D	Small ubiquitin-related modifier. (98 aa)
	BnaA04g05330D	BnaA04g05330D protein. (71 aa)
	BnaA08g07930D	BnaA08g07930D protein. (154 aa)
	BnaA07g09990D	BnaA07g09990D protein. (156 aa)
	BnaC09g32430D	BnaC09g32430D protein. (178 aa)
	BnaA06g25140D	BnaA06g25140D protein. (247 aa)
	BnaC01g19050D	Small ubiquitin-related modifier. (105 aa)
	BnaC05g09760D	BnaC05g09760D protein. (78 aa)
	BnaA05g08370D	BnaA05g08370D protein. (158 aa)
	BnaC06g07010D	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family. (93 aa)
	BnaA01g24730D	BnaA01g24730D protein. (73 aa)
	BnaA04g26340D	Ubiquitin-related modifier 1; Belongs to the URM1 family. (77 aa)
	BnaC09g21810D	BnaC09g21810D protein. (101 aa)
	BnaA08g20480D	BnaA08g20480D protein. (87 aa)
	BnaA09g19810D	BnaA09g19810D protein. (153 aa)
	BnaA03g48300D	Small ubiquitin-related modifier. (101 aa)
	BnaCnng19460D	BnaCnng19460D protein. (156 aa)
	BnaA07g37050D	BnaA07g37050D protein. (224 aa)
	BnaA03g56920D	Ubiquitin-related modifier 1 homolog; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress spec [...] (99 aa)
	BnaCnng28480D	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family. (94 aa)
	BnaCnng30170D	BnaCnng30170D protein. (304 aa)
	BnaAnng17040D	BnaAnng17040D protein. (102 aa)
	BnaA06g38490D	BnaA06g38490D protein. (108 aa)
	BnaA08g30590D	BnaA08g30590D protein. (82 aa)
	SUMO2.1	Small ubiquitin-related modifier. (104 aa)
	BnaAnng33460D	BnaAnng33460D protein. (105 aa)
	BnaC05g50180D	BnaC05g50180D protein. (104 aa)
	BnaUnng04590D	BnaUnng04590D protein. (83 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g24730D	BnaA02g09210D	A0A078H902	A0A078G5P2	BnaA01g24730D protein.	Small ubiquitin-related modifier.	0.431
BnaA01g24730D	BnaA03g48300D	A0A078H902	A0A078IBS3	BnaA01g24730D protein.	Small ubiquitin-related modifier.	0.431
BnaA01g24730D	BnaA06g38490D	A0A078H902	A0A078JUU5	BnaA01g24730D protein.	BnaA06g38490D protein.	0.431
BnaA01g24730D	BnaA08g14280D	A0A078H902	A0A078FN23	BnaA01g24730D protein.	Small ubiquitin-related modifier.	0.431
BnaA01g24730D	BnaA10g09410D	A0A078H902	A0A078FX44	BnaA01g24730D protein.	Small ubiquitin-related modifier.	0.431
BnaA01g24730D	BnaA10g09970D	A0A078H902	A0A078FYD8	BnaA01g24730D protein.	BnaA10g09970D protein.	0.431
BnaA01g24730D	BnaAnng17040D	A0A078H902	A0A078J9Y8	BnaA01g24730D protein.	BnaAnng17040D protein.	0.431
BnaA01g24730D	BnaC01g19050D	A0A078H902	A0A078GXA8	BnaA01g24730D protein.	Small ubiquitin-related modifier.	0.431
BnaA01g24730D	BnaC04g11940D	A0A078H902	A0A078FGM3	BnaA01g24730D protein.	Small ubiquitin-related modifier.	0.431
BnaA01g24730D	BnaC04g11950D	A0A078H902	A0A078FCS3	BnaA01g24730D protein.	BnaC04g11950D protein.	0.431
BnaA01g24730D	BnaC05g50180D	A0A078H902	A0A078JY99	BnaA01g24730D protein.	BnaC05g50180D protein.	0.431
BnaA01g24730D	BnaC06g07010D	A0A078H902	A0A078H899	BnaA01g24730D protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.	0.514
BnaA01g24730D	BnaC09g32430D	A0A078H902	A0A078GU48	BnaA01g24730D protein.	BnaC09g32430D protein.	0.431
BnaA01g24730D	BnaCnng04480D	A0A078H902	A0A078FKS3	BnaA01g24730D protein.	BnaCnng04480D protein.	0.431
BnaA01g24730D	BnaCnng28480D	A0A078H902	A0A078IY18	BnaA01g24730D protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.	0.514
BnaA01g24730D	SUMO2.1	A0A078H902	V9LYE4	BnaA01g24730D protein.	Small ubiquitin-related modifier.	0.431
BnaA01g24730D	SUMO5.1	A0A078H902	V9LY69	BnaA01g24730D protein.	Small ubiquitin-related modifier.	0.431
BnaA02g09210D	BnaA01g24730D	A0A078G5P2	A0A078H902	Small ubiquitin-related modifier.	BnaA01g24730D protein.	0.431
BnaA02g09210D	BnaA04g05330D	A0A078G5P2	A0A078GCW5	Small ubiquitin-related modifier.	BnaA04g05330D protein.	0.799
BnaA02g09210D	BnaA05g08370D	A0A078G5P2	A0A078GZ20	Small ubiquitin-related modifier.	BnaA05g08370D protein.	0.407