19 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC07g15550D	BnaC07g15550D protein. (44 aa)
	BnaA05g26350D	BnaA05g26350D protein. (177 aa)
	BnaC03g71040D	BnaC03g71040D protein. (513 aa)
	BnaA09g03590D	BnaA09g03590D protein. (535 aa)
	BnaC09g28420D	BnaC09g28420D protein. (51 aa)
	BnaA02g10840D	BnaA02g10840D protein. (291 aa)
	BnaC09g28460D	BnaC09g28460D protein. (201 aa)
	BnaC02g26240D	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	BnaC09g37610D	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (178 aa)
	BnaA08g00080D	BnaA08g00080D protein. (519 aa)
	BnaA02g29790D	BnaA02g29790D protein. (445 aa)
	BnaA03g47570D	BnaA03g47570D protein. (313 aa)
	BnaC02g39570D	BnaC02g39570D protein. (525 aa)
	BnaA08g31010D	BnaA08g31010D protein. (322 aa)
	BnaAnng11410D	BnaAnng11410D protein. (531 aa)
	BnaCnng23670D	BnaCnng23670D protein. (323 aa)
	BnaC03g73340D	BnaC03g73340D protein. (505 aa)
	BnaCnng34340D	BnaCnng34340D protein. (515 aa)
	BnaAnng18930D	BnaAnng18930D protein. (521 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA02g10840D	BnaA02g29790D	A0A078GPE0	A0A078I5H1	BnaA02g10840D protein.	BnaA02g29790D protein.	0.980
BnaA02g10840D	BnaA03g47570D	A0A078GPE0	A0A078IJL7	BnaA02g10840D protein.	BnaA03g47570D protein.	0.595
BnaA02g10840D	BnaA05g26350D	A0A078GPE0	A0A078F5S8	BnaA02g10840D protein.	BnaA05g26350D protein.	0.980
BnaA02g10840D	BnaA08g00080D	A0A078GPE0	A0A078HXD6	BnaA02g10840D protein.	BnaA08g00080D protein.	0.983
BnaA02g10840D	BnaA08g31010D	A0A078GPE0	A0A078IR48	BnaA02g10840D protein.	BnaA08g31010D protein.	0.595
BnaA02g10840D	BnaA09g03590D	A0A078GPE0	A0A078G305	BnaA02g10840D protein.	BnaA09g03590D protein.	0.996
BnaA02g10840D	BnaAnng11410D	A0A078GPE0	A0A078ISR9	BnaA02g10840D protein.	BnaAnng11410D protein.	0.996
BnaA02g10840D	BnaAnng18930D	A0A078GPE0	A0A078J8W4	BnaA02g10840D protein.	BnaAnng18930D protein.	0.983
BnaA02g10840D	BnaC02g26240D	A0A078GPE0	A0A078H7X0	BnaA02g10840D protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.995
BnaA02g10840D	BnaC02g39570D	A0A078GPE0	A0A078ING1	BnaA02g10840D protein.	BnaC02g39570D protein.	0.996
BnaA02g10840D	BnaC03g71040D	A0A078GPE0	A0A078F7R4	BnaA02g10840D protein.	BnaC03g71040D protein.	0.983
BnaA02g10840D	BnaC03g73340D	A0A078GPE0	A0A078J3X0	BnaA02g10840D protein.	BnaC03g73340D protein.	0.980
BnaA02g10840D	BnaC09g28460D	A0A078GPE0	A0A078GRH7	BnaA02g10840D protein.	BnaC09g28460D protein.	0.547
BnaA02g10840D	BnaC09g37610D	A0A078GPE0	A0A078HEG0	BnaA02g10840D protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.995
BnaA02g10840D	BnaCnng23670D	A0A078GPE0	A0A078ITV0	BnaA02g10840D protein.	BnaCnng23670D protein.	0.980
BnaA02g10840D	BnaCnng34340D	A0A078GPE0	A0A078J4T8	BnaA02g10840D protein.	BnaCnng34340D protein.	0.983
BnaA02g29790D	BnaA02g10840D	A0A078I5H1	A0A078GPE0	BnaA02g29790D protein.	BnaA02g10840D protein.	0.980
BnaA02g29790D	BnaA03g47570D	A0A078I5H1	A0A078IJL7	BnaA02g29790D protein.	BnaA03g47570D protein.	0.980
BnaA02g29790D	BnaA05g26350D	A0A078I5H1	A0A078F5S8	BnaA02g29790D protein.	BnaA05g26350D protein.	0.561
BnaA02g29790D	BnaA08g00080D	A0A078I5H1	A0A078HXD6	BnaA02g29790D protein.	BnaA08g00080D protein.	0.568