98 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA07g02080D	Peptidyl-prolyl cis-trans isomerase. (119 aa)
	BnaC01g19710D	BnaC01g19710D protein. (129 aa)
	BnaA02g30020D	BnaA02g30020D protein. (102 aa)
	BnaA02g30000D	BnaA02g30000D protein. (99 aa)
	BnaA04g11410D	BnaA04g11410D protein. (654 aa)
	BnaC08g47990D	BnaC08g47990D protein. (80 aa)
	BnaA08g31440D	BnaA08g31440D protein. (265 aa)
	BnaC03g67630D	BnaC03g67630D protein. (305 aa)
	BnaC04g37300D	BnaC04g37300D protein. (143 aa)
	BnaC04g37320D	BnaC04g37320D protein. (214 aa)
	BnaC04g37340D	BnaC04g37340D protein. (144 aa)
	BnaA09g47920D	BnaA09g47920D protein. (916 aa)
	BnaC08g42210D	BnaC08g42210D protein. (849 aa)
	BnaA09g11260D	BnaA09g11260D protein. (343 aa)
	BnaC01g22020D	BnaC01g22020D protein. (502 aa)
	BnaA01g19600D	BnaA01g19600D protein. (152 aa)
	BnaC03g62810D	BnaC03g62810D protein; Belongs to the protein kinase superfamily. (380 aa)
	BnaC03g16110D	BnaC03g16110D protein. (119 aa)
	BnaA01g19610D	BnaA01g19610D protein. (50 aa)
	BnaCnng06680D	BnaCnng06680D protein; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
	BnaA01g17670D	BnaA01g17670D protein. (189 aa)
	BnaA02g33730D	BnaA02g33730D protein. (110 aa)
	BnaA02g34380D	BnaA02g34380D protein. (78 aa)
	BnaA01g17230D	BnaA01g17230D protein. (166 aa)
	BnaA01g17680D	BnaA01g17680D protein. (330 aa)
	BnaA02g33740D	BnaA02g33740D protein. (120 aa)
	BnaA08g26550D	BnaA08g26550D protein; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
	BnaA06g25390D	Peptidyl-prolyl cis-trans isomerase. (119 aa)
	BnaA02g10580D	BnaA02g10580D protein. (121 aa)
	BnaA02g10620D	BnaA02g10620D protein. (99 aa)
	BnaA02g10610D	BnaA02g10610D protein. (121 aa)
	BnaA02g10600D	BnaA02g10600D protein. (121 aa)
	BnaC09g11660D	BnaC09g11660D protein. (341 aa)
	BnaC07g03770D	Peptidyl-prolyl cis-trans isomerase. (119 aa)
	BnaA08g12500D	BnaA08g12500D protein. (347 aa)
	BnaA09g00560D	BnaA09g00560D protein; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
	BnaC07g30970D	Exocyst subunit Exo70 family protein; Component of the exocyst complex. (938 aa)
	BnaAnng31110D	BnaAnng31110D protein; Belongs to the protein kinase superfamily. (340 aa)
	BnaAnng35300D	BnaAnng35300D protein; Belongs to the protein kinase superfamily. (374 aa)
	BnaC02g44720D	BnaC02g44720D protein. (121 aa)
	BnaAnng27590D	BnaAnng27590D protein. (81 aa)
	BnaCnng58950D	BnaCnng58950D protein. (94 aa)
	BnaA01g34690D	BnaA01g34690D protein. (178 aa)
	BnaAnng27530D	BnaAnng27530D protein. (89 aa)
	BnaCnng59680D	BnaCnng59680D protein. (760 aa)
	BnaCnng52970D	BnaCnng52970D protein. (200 aa)
	BnaC02g44830D	BnaA02g10590D protein. (121 aa)
	BnaCnng52760D	BnaCnng52760D protein; Belongs to the protein kinase superfamily. (374 aa)
	BnaC02g48240D	BnaC02g48240D protein. (99 aa)
	BnaC07g50210D	BnaC07g50210D protein; Belongs to the protein kinase superfamily. (374 aa)
	BnaAnng20600D	BnaAnng20600D protein; Belongs to the small GTPase superfamily. SAR1 family. (191 aa)
	BnaA09g55600D	BnaA09g55600D protein. (389 aa)
	BnaC07g50930D	BnaC07g50930D protein. (348 aa)
	BnaC09g47810D	BnaC09g47810D protein. (330 aa)
	BnaC06g01260D	Peptidyl-prolyl cis-trans isomerase. (119 aa)
	BnaC04g37020D	BnaC04g37020D protein. (98 aa)
	BnaA09g02170D	BnaA09g02170D protein. (200 aa)
	BnaC05g08450D	BnaC05g08450D protein. (916 aa)
	BnaC04g36610D	BnaC04g36610D protein. (134 aa)
	BnaA09g02560D	BnaA09g02560D protein. (221 aa)
	BnaC09g40600D	BnaC09g40600D protein. (220 aa)
	BnaA04g12440D	BnaA04g12440D protein. (127 aa)
	BnaA07g08270D	BnaA07g08270D protein. (137 aa)
	BnaC01g23500D	BnaC01g23500D protein. (145 aa)
	BnaC03g49500D	BnaC03g49500D protein. (80 aa)
	BnaA03g51450D	BnaA03g51450D protein. (349 aa)
	BnaC02g01320D	BnaC02g01320D protein. (123 aa)
	BnaA09g42920D	BnaA09g42920D protein. (126 aa)
	BnaC07g33480D	BnaC07g33480D protein. (499 aa)
	BnaA05g11700D	BnaA05g11700D protein. (224 aa)
	BnaC07g33750D	BnaC07g33750D protein. (81 aa)
	BnaA06g23720D	BnaA06g23720D protein. (80 aa)
	BnaC07g33460D	BnaC07g33460D protein. (94 aa)
	BnaA03g18970D	BnaA03g18970D protein. (336 aa)
	BnaA09g15410D	BnaA09g15410D protein; Belongs to the small GTPase superfamily. SAR1 family. (195 aa)
	BnaA01g05440D	BnaA01g05440D protein. (129 aa)
	BnaC02g41770D	BnaC02g41770D protein. (107 aa)
	BnaAnng06260D	BnaAnng06260D protein. (221 aa)
	BnaC02g42550D	BnaC02g42550D protein. (110 aa)
	BnaA02g30010D	BnaA02g30010D protein. (101 aa)
	BnaC03g60670D	BnaC03g60670D protein. (402 aa)
	BnaA03g13300D	BnaA03g13300D protein. (118 aa)
	BnaC01g27280D	BnaC01g27280D protein; Belongs to the small GTPase superfamily. SAR1 family. (195 aa)
	BnaA10g30570D	BnaA10g30570D protein. (423 aa)
	BnaCnng40820D	BnaCnng40820D protein. (258 aa)
	BnaA03g58360D	BnaA03g58360D protein; Belongs to the protein kinase superfamily. (264 aa)
	BnaA08g30650D	BnaA08g30650D protein. (444 aa)
	BnaCnng27900D	BnaCnng27900D protein. (337 aa)
	BnaC03g14830D	BnaC03g14830D protein. (204 aa)
	BnaC03g67190D	BnaC03g67190D protein. (454 aa)
	BnaA08g31460D	BnaA08g31460D protein. (180 aa)
	BnaC04g54320D	BnaC04g54320D protein. (113 aa)
	BnaC03g67170D	BnaC03g67170D protein. (649 aa)
	BnaC03g72510D	BnaC03g72510D protein. (323 aa)
	BnaC01g00310D	BnaC01g00310D protein. (129 aa)
	BnaC02g22440D	BnaC02g22440D protein. (88 aa)
	BnaC02g43300D	BnaC02g43300D protein. (78 aa)
	BnaA02g33020D	BnaA02g33020D protein. (182 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g17230D	BnaA02g34380D	A0A078H371	A0A078H375	BnaA01g17230D protein.	BnaA02g34380D protein.	0.417
BnaA01g17230D	BnaA06g23720D	A0A078H371	A0A078F703	BnaA01g17230D protein.	BnaA06g23720D protein.	0.417
BnaA01g17230D	BnaC02g43300D	A0A078H371	A0A078I9K2	BnaA01g17230D protein.	BnaC02g43300D protein.	0.417
BnaA01g17230D	BnaC03g49500D	A0A078H371	A0A078FNN4	BnaA01g17230D protein.	BnaC03g49500D protein.	0.417
BnaA02g34380D	BnaA01g17230D	A0A078H375	A0A078H371	BnaA02g34380D protein.	BnaA01g17230D protein.	0.417
BnaA02g34380D	BnaAnng27590D	A0A078H375	A0A078JSY0	BnaA02g34380D protein.	BnaAnng27590D protein.	0.417
BnaA02g34380D	BnaC01g19710D	A0A078H375	A0A078HS75	BnaA02g34380D protein.	BnaC01g19710D protein.	0.417
BnaA02g34380D	BnaC07g33750D	A0A078H375	A0A078F8M2	BnaA02g34380D protein.	BnaC07g33750D protein.	0.417
BnaA02g34380D	BnaC08g47990D	A0A078H375	A0A078IP46	BnaA02g34380D protein.	BnaC08g47990D protein.	0.417
BnaA03g51450D	BnaA09g47920D	A0A078FK87	A0A078HAY0	BnaA03g51450D protein.	BnaA09g47920D protein.	0.756
BnaA03g51450D	BnaC05g08450D	A0A078FK87	A0A078G1Y7	BnaA03g51450D protein.	BnaC05g08450D protein.	0.756
BnaA03g51450D	BnaC08g42210D	A0A078FK87	A0A078HAD7	BnaA03g51450D protein.	BnaC08g42210D protein.	0.756
BnaA06g23720D	BnaA01g17230D	A0A078F703	A0A078H371	BnaA06g23720D protein.	BnaA01g17230D protein.	0.417
BnaA06g23720D	BnaAnng27590D	A0A078F703	A0A078JSY0	BnaA06g23720D protein.	BnaAnng27590D protein.	0.417
BnaA06g23720D	BnaC01g19710D	A0A078F703	A0A078HS75	BnaA06g23720D protein.	BnaC01g19710D protein.	0.417
BnaA06g23720D	BnaC07g33750D	A0A078F703	A0A078F8M2	BnaA06g23720D protein.	BnaC07g33750D protein.	0.417
BnaA06g23720D	BnaC08g47990D	A0A078F703	A0A078IP46	BnaA06g23720D protein.	BnaC08g47990D protein.	0.417
BnaA08g12500D	BnaA09g47920D	A0A078GD33	A0A078HAY0	BnaA08g12500D protein.	BnaA09g47920D protein.	0.756
BnaA08g12500D	BnaC05g08450D	A0A078GD33	A0A078G1Y7	BnaA08g12500D protein.	BnaC05g08450D protein.	0.756
BnaA08g12500D	BnaC08g42210D	A0A078GD33	A0A078HAD7	BnaA08g12500D protein.	BnaC08g42210D protein.	0.756