95 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA09g02630D	BnaA09g02630D protein. (255 aa)
	BnaAnng37070D	BnaAnng37070D protein. (188 aa)
	BnaAnng39320D	BnaAnng39320D protein. (306 aa)
	BnaCnng70010D	BnaCnng70010D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (327 aa)
	BnaCnng69220D	BnaCnng69220D protein. (265 aa)
	BnaCnng73230D	BnaCnng73230D protein. (194 aa)
	BnaCnng73990D	BnaCnng73990D protein. (125 aa)
	BnaCnng76420D	BnaCnng76420D protein. (341 aa)
	BnaC04g08590D	BnaC04g08590D protein. (148 aa)
	BnaC03g41740D	BnaC03g41740D protein. (549 aa)
	BnaC05g37340D	BnaC05g37340D protein. (720 aa)
	BnaA02g33330D	BnaA02g33330D protein. (428 aa)
	BnaA04g17890D	BnaA04g17890D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (352 aa)
	BnaA04g17880D	BnaA04g17880D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (345 aa)
	BnaC04g31810D	BnaC04g31810D protein. (310 aa)
	BnaC02g36730D	Uridine kinase; Belongs to the uridine kinase family. (483 aa)
	BnaC01g32460D	BnaC01g32460D protein. (587 aa)
	BnaC05g43980D	Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family. (532 aa)
	BnaA02g19080D	BnaA02g19080D protein. (471 aa)
	BnaC04g51320D	BnaC04g51320D protein. (125 aa)
	BnaC05g25320D	BnaC05g25320D protein. (327 aa)
	BnaC05g25300D	BnaC05g25300D protein. (630 aa)
	BnaC05g25290D	BnaC05g25290D protein. (376 aa)
	BnaC03g42550D	BnaC03g42550D protein. (305 aa)
	BnaC03g42590D	BnaC03g42590D protein. (404 aa)
	BnaC06g18520D	BnaC06g18520D protein. (129 aa)
	BnaC04g02130D	BnaC04g02130D protein. (752 aa)
	BnaC04g02020D	Thioredoxin reductase. (543 aa)
	BnaC03g23440D	Thioredoxin reductase. (511 aa)
	BnaC01g39470D	Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family. (529 aa)
	BnaC01g35540D	BnaC01g35540D protein. (602 aa)
	BnaC03g23500D	BnaC03g23500D protein. (766 aa)
	BnaA05g20160D	BnaA05g20160D protein. (88 aa)
	BnaA05g20140D	BnaA05g20140D protein. (460 aa)
	BnaC05g02780D	BnaC05g02780D protein. (304 aa)
	BnaA09g20140D	BnaA09g20140D protein. (352 aa)
	BnaA09g29500D	BnaA09g29500D protein. (507 aa)
	BnaA04g12640D	BnaA04g12640D protein. (1068 aa)
	BnaA04g11700D	BnaA04g11700D protein. (409 aa)
	BnaA08g29080D	BnaA08g29080D protein. (334 aa)
	BnaA08g28060D	BnaA08g28060D protein. (294 aa)
	BnaC05g19650D	BnaC05g19650D protein. (508 aa)
	BnaC02g25270D	BnaC02g25270D protein. (471 aa)
	BnaA06g32350D	Uridine kinase; Belongs to the uridine kinase family. (483 aa)
	BnaA09g42810D	BnaA09g42810D protein. (2149 aa)
	BnaC06g00880D	BnaC06g00880D protein. (207 aa)
	BnaA05g17440D	BnaA05g17440D protein. (406 aa)
	BnaA02g26620D	BnaA02g26620D protein. (310 aa)
	BnaA09g39860D	BnaA09g39860D protein. (130 aa)
	BnaA03g18970D	BnaA03g18970D protein. (336 aa)
	BnaA04g16380D	BnaA04g16380D protein. (341 aa)
	BnaA07g37530D	BnaA07g37530D protein. (341 aa)
	BnaA04g10180D	BnaA04g10180D protein. (79 aa)
	BnaC02g42500D	BnaC02g42500D protein. (91 aa)
	BnaA07g31840D	BnaA07g31840D protein. (413 aa)
	BnaC02g42490D	BnaC02g42490D protein. (152 aa)
	BnaA02g17020D	BnaA02g17020D protein. (505 aa)
	BnaCnng13700D	BnaCnng13700D protein. (2154 aa)
	BnaA08g02070D	BnaA08g02070D protein. (168 aa)
	BnaA02g29060D	BnaA02g29060D protein. (413 aa)
	BnaA04g26990D	BnaA04g26990D protein. (124 aa)
	BnaA09g52030D	BnaA09g52030D protein. (519 aa)
	BnaC03g72510D	BnaC03g72510D protein. (323 aa)
	BnaCnng27900D	BnaCnng27900D protein. (337 aa)
	BnaC03g75260D	BnaC03g75260D protein. (512 aa)
	BnaA04g29120D	BnaA04g29120D protein. (215 aa)
	BnaC04g51970D	BnaC04g51970D protein. (126 aa)
	BnaA03g55420D	BnaA03g55420D protein. (368 aa)
	BnaCnng33700D	BnaCnng33700D protein. (456 aa)
	BnaA01g36840D	BnaA01g36840D protein. (425 aa)
	BnaC02g46080D	BnaC02g46080D protein. (378 aa)
	BnaC02g46090D	BnaC02g46090D protein. (155 aa)
	BnaCnng38870D	BnaCnng38870D protein. (311 aa)
	BnaA06g39610D	BnaA06g39610D protein. (306 aa)
	BnaCnng43220D	BnaCnng43220D protein. (336 aa)
	BnaCnng51500D	Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family. (529 aa)
	BnaA02g29910D	BnaA02g29910D protein. (251 aa)
	BnaCnng61690D	BnaCnng61690D protein. (123 aa)
	BnaCnng61700D	BnaCnng61700D protein. (152 aa)
	BnaCnng65380D	BnaCnng65380D protein. (288 aa)
	BnaA05g37500D	BnaA05g37500D protein. (276 aa)
	BnaC05g48490D	BnaC05g48490D protein. (280 aa)
	BnaC06g01880D	BnaC06g01880D protein. (328 aa)
	BnaC05g12870D	BnaC05g12870D protein. (469 aa)
	BnaC05g11860D	BnaC05g11860D protein. (91 aa)
	BnaA01g24830D	BnaA01g24830D protein. (395 aa)
	BnaA02g30450D	BnaA02g30450D protein. (301 aa)
	BnaA02g28680D	Uridine kinase; Belongs to the uridine kinase family. (483 aa)
	BnaA06g18950D	BnaA06g18950D protein. (530 aa)
	BnaC05g30430D	BnaC05g30430D protein. (384 aa)
	BnaCnng08240D	BnaCnng08240D protein. (413 aa)
	BnaA06g11330D	BnaA06g11330D protein. (466 aa)
	BnaA03g19610D	BnaA03g19610D protein. (766 aa)
	BnaA05g29650D	Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family. (529 aa)
	BnaA03g19550D	Thioredoxin reductase. (511 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g36840D	BnaA02g30450D	A0A078J732	A0A078H8R3	BnaA01g36840D protein.	BnaA02g30450D protein.	0.410
BnaA02g17020D	BnaA04g11700D	A0A078I9H5	A0A078FS38	BnaA02g17020D protein.	BnaA04g11700D protein.	0.885
BnaA02g30450D	BnaA01g36840D	A0A078H8R3	A0A078J732	BnaA02g30450D protein.	BnaA01g36840D protein.	0.410
BnaA02g30450D	BnaA08g02070D	A0A078H8R3	A0A078IBI2	BnaA02g30450D protein.	BnaA08g02070D protein.	0.533
BnaA02g30450D	BnaC01g32460D	A0A078H8R3	A0A078GSK2	BnaA02g30450D protein.	BnaC01g32460D protein.	0.470
BnaA02g30450D	BnaC03g41740D	A0A078H8R3	A0A078H108	BnaA02g30450D protein.	BnaC03g41740D protein.	0.470
BnaA02g30450D	BnaC05g11860D	A0A078H8R3	A0A078HP76	BnaA02g30450D protein.	BnaC05g11860D protein.	0.477
BnaA02g30450D	BnaCnng43220D	A0A078H8R3	A0A078JG35	BnaA02g30450D protein.	BnaCnng43220D protein.	0.493
BnaA03g18970D	BnaA08g29080D	A0A078F3N1	A0A078FRW3	BnaA03g18970D protein.	BnaA08g29080D protein.	0.508
BnaA03g18970D	BnaCnng38870D	A0A078F3N1	A0A078JCF2	BnaA03g18970D protein.	BnaCnng38870D protein.	0.491
BnaA03g19550D	BnaC03g23440D	A0A078HAC7	A0A078GB20	Thioredoxin reductase.	Thioredoxin reductase.	0.744
BnaA03g19550D	BnaC04g02020D	A0A078HAC7	A0A078GBK2	Thioredoxin reductase.	Thioredoxin reductase.	0.744
BnaA04g10180D	BnaC01g35540D	A0A078I3H2	A0A078G936	BnaA04g10180D protein.	BnaC01g35540D protein.	0.457
BnaA04g10180D	BnaC05g37340D	A0A078I3H2	A0A078GZX0	BnaA04g10180D protein.	BnaC05g37340D protein.	0.457
BnaA04g11700D	BnaA02g17020D	A0A078FS38	A0A078I9H5	BnaA04g11700D protein.	BnaA02g17020D protein.	0.885
BnaA04g11700D	BnaA07g31840D	A0A078FS38	A0A078I7M5	BnaA04g11700D protein.	BnaA07g31840D protein.	0.885
BnaA04g11700D	BnaCnng08240D	A0A078FS38	A0A078HFW4	BnaA04g11700D protein.	BnaCnng08240D protein.	0.885
BnaA04g17880D	BnaA08g29080D	A0A078GWW8	A0A078FRW3	BnaA04g17880D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	BnaA08g29080D protein.	0.401
BnaA04g17880D	BnaCnng38870D	A0A078GWW8	A0A078JCF2	BnaA04g17880D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	BnaCnng38870D protein.	0.401
BnaA04g17880D	BnaCnng43220D	A0A078GWW8	A0A078JG35	BnaA04g17880D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	BnaCnng43220D protein.	0.493