52 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC09g12750D	BnaC09g12750D protein. (294 aa)
	BnaC03g63450D	BnaC03g63450D protein. (145 aa)
	BnaCnng77230D	BnaCnng77230D protein. (122 aa)
	BnaC05g11770D	BnaC05g11770D protein. (920 aa)
	BnaA09g35160D	BnaA09g35160D protein. (628 aa)
	BnaC08g26410D	BnaC08g26410D protein. (628 aa)
	BnaC03g24030D	BnaC03g24030D protein. (50 aa)
	BnaA07g12530D	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (528 aa)
	BnaA07g01940D	BnaA07g01940D protein. (775 aa)
	BnaA09g08990D	BnaA09g08990D protein. (583 aa)
	BnaAnng09370D	BnaAnng09370D protein. (1205 aa)
	BnaC06g12430D	BnaC06g12430D protein. (223 aa)
	BnaAnng09360D	BnaAnng09360D protein. (1402 aa)
	BnaC03g44910D	BnaC03g44910D protein. (124 aa)
	BnaCnng22750D	BnaCnng22750D protein. (713 aa)
	BnaC03g76710D	BnaC03g76710D protein. (1049 aa)
	BnaA05g34470D	BnaA05g34470D protein. (285 aa)
	BnaCnng27820D	BnaCnng27820D protein. (931 aa)
	BnaA09g52220D	BnaA09g52220D protein. (349 aa)
	BnaCnng40350D	BnaCnng40350D protein. (688 aa)
	BnaCnng40370D	BnaCnng40370D protein. (103 aa)
	BnaA02g35820D	BnaA02g35820D protein. (892 aa)
	BnaAnng21570D	BnaAnng21570D protein. (180 aa)
	BnaCnng51790D	BnaCnng51790D protein. (89 aa)
	BnaAnng23730D	BnaAnng23730D protein. (251 aa)
	BnaCnng65100D	BnaCnng65100D protein. (664 aa)
	BnaAnng34930D	BnaAnng34930D protein. (285 aa)
	BnaA09g53020D	BnaA09g53020D protein. (298 aa)
	BnaCnng77980D	BnaCnng77980D protein. (102 aa)
	BnaCnng64810D	BnaCnng64810D protein. (661 aa)
	BnaC02g06840D	BnaC02g06840D protein. (868 aa)
	BnaA06g10160D	BnaA06g10160D protein. (1571 aa)
	BnaC07g16690D	BnaC07g16690D protein. (261 aa)
	BnaC09g09250D	BnaC09g09250D protein. (591 aa)
	BnaC09g42100D	BnaC09g42100D protein. (40 aa)
	BnaC09g42110D	BnaC09g42110D protein. (99 aa)
	BnaC07g03590D	BnaC07g03590D protein. (782 aa)
	BnaA08g15320D	BnaA08g15320D protein. (1049 aa)
	BnaA07g02510D	BnaA07g02510D protein. (580 aa)
	BnaA05g19390D	BnaA05g19390D protein. (1024 aa)
	BnaA01g18480D	BnaA01g18480D protein. (931 aa)
	BnaC03g30050D	BnaC03g30050D protein. (911 aa)
	BnaC06g01400D	BnaC06g01400D protein. (706 aa)
	BnaC04g04010D	BnaC04g04010D protein. (84 aa)
	BnaAnng02790D	BnaAnng02790D protein. (280 aa)
	BnaA09g07860D	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (531 aa)
	BnaC04g02720D	BnaC04g02720D protein. (282 aa)
	BnaC04g04050D	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (768 aa)
	BnaC09g41090D	BnaC09g41090D protein. (877 aa)
	BnaA08g13850D	BnaA08g13850D protein. (644 aa)
	BnaC07g03320D	BnaC07g03320D protein. (61 aa)
	BnaA05g27100D	BnaA05g27100D protein. (1904 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g18480D	BnaA02g35820D	A0A078G917	A0A078JH67	BnaA01g18480D protein.	BnaA02g35820D protein.	0.994
BnaA01g18480D	BnaA05g19390D	A0A078G917	A0A078GFU7	BnaA01g18480D protein.	BnaA05g19390D protein.	0.992
BnaA01g18480D	BnaA05g27100D	A0A078G917	A0A078F5Z4	BnaA01g18480D protein.	BnaA05g27100D protein.	0.976
BnaA01g18480D	BnaA05g34470D	A0A078G917	A0A078IVJ0	BnaA01g18480D protein.	BnaA05g34470D protein.	0.440
BnaA01g18480D	BnaA06g10160D	A0A078G917	A0A078HIE8	BnaA01g18480D protein.	BnaA06g10160D protein.	0.997
BnaA01g18480D	BnaA07g01940D	A0A078G917	A0A078I878	BnaA01g18480D protein.	BnaA07g01940D protein.	0.930
BnaA01g18480D	BnaA07g02510D	A0A078G917	A0A078GG17	BnaA01g18480D protein.	BnaA07g02510D protein.	0.988
BnaA01g18480D	BnaA07g12530D	A0A078G917	A0A078I585	BnaA01g18480D protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.986
BnaA01g18480D	BnaA08g13850D	A0A078G917	A0A078FMZ1	BnaA01g18480D protein.	BnaA08g13850D protein.	0.999
BnaA01g18480D	BnaA08g15320D	A0A078G917	A0A078GJK0	BnaA01g18480D protein.	BnaA08g15320D protein.	0.992
BnaA01g18480D	BnaA09g07860D	A0A078G917	A0A078FZK3	BnaA01g18480D protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.986
BnaA01g18480D	BnaA09g08990D	A0A078G917	A0A078I992	BnaA01g18480D protein.	BnaA09g08990D protein.	0.988
BnaA01g18480D	BnaA09g35160D	A0A078G917	A0A078HSF7	BnaA01g18480D protein.	BnaA09g35160D protein.	0.930
BnaA01g18480D	BnaA09g52220D	A0A078G917	A0A078J387	BnaA01g18480D protein.	BnaA09g52220D protein.	0.706
BnaA01g18480D	BnaA09g53020D	A0A078G917	A0A078JTZ1	BnaA01g18480D protein.	BnaA09g53020D protein.	0.991
BnaA01g18480D	BnaAnng02790D	A0A078G917	A0A078G028	BnaA01g18480D protein.	BnaAnng02790D protein.	0.706
BnaA01g18480D	BnaAnng09360D	A0A078G917	A0A078IEV4	BnaA01g18480D protein.	BnaAnng09360D protein.	0.976
BnaA01g18480D	BnaAnng09370D	A0A078G917	A0A078IAI2	BnaA01g18480D protein.	BnaAnng09370D protein.	0.976
BnaA01g18480D	BnaAnng21570D	A0A078G917	A0A078JHY3	BnaA01g18480D protein.	BnaAnng21570D protein.	0.998
BnaA01g18480D	BnaAnng23730D	A0A078G917	A0A078JP77	BnaA01g18480D protein.	BnaAnng23730D protein.	0.976