36 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC02g09960D	BnaC02g09960D protein. (264 aa)
	BnaA06g18890D	BnaA06g18890D protein. (251 aa)
	BnaA10g11460D	BnaA10g11460D protein. (238 aa)
	BnaCnng09500D	BnaCnng09500D protein. (321 aa)
	BnaA10g07100D	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily. (535 aa)
	BnaA03g18060D	BnaA03g18060D protein. (249 aa)
	BnaC04g12610D	BnaC04g12610D protein. (261 aa)
	BnaA09g39620D	BnaA09g39620D protein. (212 aa)
	BnaCnng03600D	BnaCnng03600D protein. (280 aa)
	BnaA06g16580D	BnaA06g16580D protein. (321 aa)
	BnaA10g27270D	BnaA10g27270D protein. (280 aa)
	BnaC09g23850D	BnaC09g23850D protein. (364 aa)
	BnaA09g17290D	BnaA09g17290D protein. (252 aa)
	BnaC03g21580D	BnaC03g21580D protein. (249 aa)
	BnaC04g47560D	BnaC04g47560D protein. (296 aa)
	BnaA04g22170D	BnaA04g22170D protein. (246 aa)
	BnaC09g32800D	BnaC09g32800D protein. (279 aa)
	BnaC09g18280D	BnaC09g18280D protein. (252 aa)
	BnaA10g12480D	BnaA10g12480D protein. (265 aa)
	BnaA10g12490D	BnaA10g12490D protein. (263 aa)
	BnaA04g19290D	BnaA04g19290D protein. (248 aa)
	BnaC06g41250D	BnaC06g41250D protein. (120 aa)
	BnaCnng36750D	BnaCnng36750D protein. (257 aa)
	BnaA05g35130D	BnaA05g35130D protein. (261 aa)
	BnaCnng55890D	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily. (539 aa)
	BnaCnng52020D	BnaCnng52020D protein. (538 aa)
	BnaAnng29390D	BnaAnng29390D protein. (322 aa)
	BnaA02g07040D	BnaA02g07040D protein. (259 aa)
	BnaA06g09100D	BnaA06g09100D protein. (261 aa)
	BnaC02g03590D	BnaC02g03590D protein. (277 aa)
	BnaA09g15360D	BnaA09g15360D protein. (1061 aa)
	BnaA03g47640D	BnaA03g47630D protein. (289 aa)
	BnaC03g60830D	BnaC03g60830D protein. (307 aa)
	BnaC05g10540D	BnaC05g10540D protein. (260 aa)
	BnaAnng05260D	BnaAnng05260D protein. (252 aa)
	BnaAnng05460D	BnaAnng05460D protein. (374 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA02g07040D	BnaA10g07100D	A0A078IWS2	A0A078FIS5	BnaA02g07040D protein.	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.	0.513
BnaA02g07040D	BnaAnng29390D	A0A078IWS2	A0A078JNK6	BnaA02g07040D protein.	BnaAnng29390D protein.	0.513
BnaA02g07040D	BnaCnng55890D	A0A078IWS2	A0A078JJC4	BnaA02g07040D protein.	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.	0.513
BnaA03g18060D	BnaA03g47640D	A0A078F009	A0A078HWB5	BnaA03g18060D protein.	BnaA03g47630D protein.	0.449
BnaA03g18060D	BnaA04g19290D	A0A078F009	A0A078HKA3	BnaA03g18060D protein.	BnaA04g19290D protein.	0.518
BnaA03g18060D	BnaA06g16580D	A0A078F009	A0A078F8J6	BnaA03g18060D protein.	BnaA06g16580D protein.	0.426
BnaA03g18060D	BnaA06g18890D	A0A078F009	A0A078HM49	BnaA03g18060D protein.	BnaA06g18890D protein.	0.486
BnaA03g18060D	BnaA10g11460D	A0A078F009	A0A078HN98	BnaA03g18060D protein.	BnaA10g11460D protein.	0.552
BnaA03g18060D	BnaC09g32800D	A0A078F009	A0A078GMS1	BnaA03g18060D protein.	BnaC09g32800D protein.	0.547
BnaA03g18060D	BnaCnng09500D	A0A078F009	A0A078HPS2	BnaA03g18060D protein.	BnaCnng09500D protein.	0.426
BnaA03g18060D	BnaCnng52020D	A0A078F009	A0A078JLN0	BnaA03g18060D protein.	BnaCnng52020D protein.	0.518
BnaA03g47640D	BnaA03g18060D	A0A078HWB5	A0A078F009	BnaA03g47630D protein.	BnaA03g18060D protein.	0.449
BnaA03g47640D	BnaA04g19290D	A0A078HWB5	A0A078HKA3	BnaA03g47630D protein.	BnaA04g19290D protein.	0.533
BnaA03g47640D	BnaA04g22170D	A0A078HWB5	A0A078FV98	BnaA03g47630D protein.	BnaA04g22170D protein.	0.448
BnaA03g47640D	BnaA10g11460D	A0A078HWB5	A0A078HN98	BnaA03g47630D protein.	BnaA10g11460D protein.	0.900
BnaA03g47640D	BnaC03g21580D	A0A078HWB5	A0A078FNJ4	BnaA03g47630D protein.	BnaC03g21580D protein.	0.451
BnaA03g47640D	BnaC03g60830D	A0A078HWB5	A0A078HRT8	BnaA03g47630D protein.	BnaC03g60830D protein.	0.405
BnaA03g47640D	BnaC09g23850D	A0A078HWB5	A0A078FJ98	BnaA03g47630D protein.	BnaC09g23850D protein.	0.497
BnaA03g47640D	BnaCnng52020D	A0A078HWB5	A0A078JLN0	BnaA03g47630D protein.	BnaCnng52020D protein.	0.533
BnaA04g19290D	BnaA03g18060D	A0A078HKA3	A0A078F009	BnaA04g19290D protein.	BnaA03g18060D protein.	0.518