16 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA02g23740D	BnaA02g23740D protein; Belongs to the RNA polymerase beta chain family. (756 aa)
	BnaA02g23730D	BnaA02g23730D protein. (367 aa)
	BnaC03g64530D	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (624 aa)
	BnaC03g63980D	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1181 aa)
	BnaC02g31180D	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1166 aa)
	BnaAnng05440D	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1166 aa)
	BnaC04g01050D	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1168 aa)
	BnaC03g23920D	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (790 aa)
	BnaA07g07580D	BnaA07g07580D protein. (224 aa)
	BnaA07g07550D	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1184 aa)
	BnaCnng12670D	BnaCnng12670D protein; Belongs to the RNA polymerase beta chain family. (690 aa)
	BnaCnng64900D	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (672 aa)
	BnaAnng33830D	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (764 aa)
	BnaCnng72590D	BnaCnng72590D protein. (141 aa)
	BnaC01g27060D	BnaC01g27060D protein; Belongs to the RNA polymerase beta chain family. (729 aa)
	BnaA01g26990D	BnaA01g26990D protein. (133 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA02g23730D	BnaA02g23740D	A0A078GMG2	A0A078GM37	BnaA02g23730D protein.	BnaA02g23740D protein; Belongs to the RNA polymerase beta chain family.	0.694
BnaA02g23730D	BnaA07g07550D	A0A078GMG2	A0A078I0V6	BnaA02g23730D protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.838
BnaA02g23730D	BnaA07g07580D	A0A078GMG2	A0A078I046	BnaA02g23730D protein.	BnaA07g07580D protein.	0.846
BnaA02g23730D	BnaAnng05440D	A0A078GMG2	A0A078HRM1	BnaA02g23730D protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.543
BnaA02g23730D	BnaC02g31180D	A0A078GMG2	A0A078HFW0	BnaA02g23730D protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.542
BnaA02g23740D	BnaA02g23730D	A0A078GM37	A0A078GMG2	BnaA02g23740D protein; Belongs to the RNA polymerase beta chain family.	BnaA02g23730D protein.	0.694
BnaA02g23740D	BnaA07g07550D	A0A078GM37	A0A078I0V6	BnaA02g23740D protein; Belongs to the RNA polymerase beta chain family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.838
BnaA02g23740D	BnaA07g07580D	A0A078GM37	A0A078I046	BnaA02g23740D protein; Belongs to the RNA polymerase beta chain family.	BnaA07g07580D protein.	0.838
BnaA02g23740D	BnaAnng05440D	A0A078GM37	A0A078HRM1	BnaA02g23740D protein; Belongs to the RNA polymerase beta chain family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.544
BnaA02g23740D	BnaC02g31180D	A0A078GM37	A0A078HFW0	BnaA02g23740D protein; Belongs to the RNA polymerase beta chain family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.543
BnaA07g07550D	BnaA02g23730D	A0A078I0V6	A0A078GMG2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	BnaA02g23730D protein.	0.838
BnaA07g07550D	BnaA02g23740D	A0A078I0V6	A0A078GM37	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	BnaA02g23740D protein; Belongs to the RNA polymerase beta chain family.	0.838
BnaA07g07550D	BnaA07g07580D	A0A078I0V6	A0A078I046	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	BnaA07g07580D protein.	0.542
BnaA07g07550D	BnaAnng05440D	A0A078I0V6	A0A078HRM1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.838
BnaA07g07550D	BnaC02g31180D	A0A078I0V6	A0A078HFW0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.838
BnaA07g07580D	BnaA02g23730D	A0A078I046	A0A078GMG2	BnaA07g07580D protein.	BnaA02g23730D protein.	0.846
BnaA07g07580D	BnaA02g23740D	A0A078I046	A0A078GM37	BnaA07g07580D protein.	BnaA02g23740D protein; Belongs to the RNA polymerase beta chain family.	0.838
BnaA07g07580D	BnaA07g07550D	A0A078I046	A0A078I0V6	BnaA07g07580D protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.542
BnaA07g07580D	BnaAnng05440D	A0A078I046	A0A078HRM1	BnaA07g07580D protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.838
BnaA07g07580D	BnaAnng33830D	A0A078I046	A0A078JS95	BnaA07g07580D protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.462