61 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA05g17380D	BnaA05g17380D protein. (757 aa)
	BnaA05g13530D	BnaA05g13530D protein. (799 aa)
	BnaC03g47920D	BnaC03g47920D protein. (236 aa)
	BnaC04g32690D	BnaC04g32690D protein. (84 aa)
	BnaUnng00680D	BnaUnng00680D protein. (663 aa)
	BnaA02g11320D	BnaA02g11320D protein. (112 aa)
	BnaC01g22590D	BnaC01g22590D protein. (509 aa)
	BnaCnng25180D	BnaCnng25180D protein. (732 aa)
	BnaC07g48920D	BnaC07g48920D protein. (82 aa)
	BnaC03g73720D	BnaC03g73720D protein. (226 aa)
	BnaC03g73690D	BnaC03g73690D protein. (559 aa)
	BnaAnng10370D	BnaAnng10370D protein. (509 aa)
	BnaAnng10320D	BnaAnng10320D protein. (233 aa)
	BnaA08g29420D	BnaA08g29420D protein. (329 aa)
	BnaA06g03150D	BnaA06g03150D protein. (659 aa)
	BnaCnng16790D	BnaCnng16790D protein. (856 aa)
	BnaA09g26950D	BnaA09g26950D protein. (286 aa)
	BnaCnng14020D	BnaCnng14020D protein. (90 aa)
	BnaA01g30140D	BnaA01g30140D protein. (559 aa)
	BnaC06g30780D	BnaC06g30780D protein. (230 aa)
	BnaC05g11600D	BnaC05g11600D protein. (688 aa)
	BnaC02g23230D	BnaC02g23230D protein. (123 aa)
	BnaA07g28490D	BnaA07g28490D protein. (638 aa)
	BnaC04g31350D	BnaC04g31350D protein. (647 aa)
	BnaC06g06510D	BnaC06g06510D protein. (493 aa)
	BnaC05g30350D	BnaC05g30350D protein. (759 aa)
	BnaC02g38090D	BnaC02g38090D protein. (565 aa)
	BnaC08g02760D	BnaC08g02760D protein. (781 aa)
	BnaC01g27340D	BnaC01g27340D protein. (696 aa)
	BnaA06g25350D	BnaA06g25350D protein. (335 aa)
	BnaCnng05180D	BnaCnng05180D protein. (166 aa)
	BnaA03g54200D	BnaA03g54200D protein. (84 aa)
	BnaUnng00520D	BnaUnng00520D protein. (320 aa)
	BnaC09g09600D	BnaC09g09600D protein. (198 aa)
	BnaC05g43720D	BnaC05g43720D protein. (116 aa)
	BnaC09g36030D	BnaC09g36030D protein. (173 aa)
	BnaA07g02470D	BnaA07g02470D protein. (69 aa)
	BnaC03g42580D	BnaC03g42580D protein. (78 aa)
	BnaC01g38100D	BnaC01g38100D protein. (561 aa)
	BnaA09g44510D	BnaA09g44510D protein. (692 aa)
	BnaC09g31870D	BnaC09g31870D protein. (304 aa)
	BnaC04g05490D	BnaC04g05490D protein. (211 aa)
	BnaA01g29170D	BnaA01g29170D protein. (675 aa)
	BnaA07g08080D	BnaA07g08080D protein. (134 aa)
	BnaC06g31060D	BnaC06g31060D protein. (644 aa)
	BnaC08g09060D	BnaC08g09060D protein. (142 aa)
	BnaA05g12080D	BnaA05g12080D protein. (101 aa)
	BnaA05g17040D	BnaA05g17040D protein. (766 aa)
	BnaC06g23790D	BnaC06g23790D protein. (258 aa)
	BnaC03g63130D	BnaC03g63130D protein. (286 aa)
	BnaCnng75370D	BnaCnng75370D protein. (247 aa)
	BnaUnng05260D	BnaUnng05260D protein. (118 aa)
	BnaCnng63780D	BnaCnng63780D protein. (193 aa)
	BnaC01g44620D	BnaC01g44620D protein. (86 aa)
	BnaCnng55950D	BnaCnng55950D protein. (79 aa)
	BnaC02g47840D	BnaC02g47840D protein. (411 aa)
	BnaA01g36980D	BnaA01g36980D protein. (843 aa)
	BnaCnng42350D	BnaCnng42350D protein. (106 aa)
	BnaA03g58810D	BnaA03g58810D protein. (747 aa)
	BnaCnng33080D	BnaCnng33080D protein. (112 aa)
	BnaCnng31180D	BnaCnng31180D protein. (167 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g29170D	BnaA01g36980D	A0A078G0L4	A0A078JEA6	BnaA01g29170D protein.	BnaA01g36980D protein.	0.436
BnaA01g29170D	BnaCnng16790D	A0A078G0L4	A0A078IFB6	BnaA01g29170D protein.	BnaCnng16790D protein.	0.434
BnaA01g30140D	BnaA06g03150D	A0A078I2M7	A0A078IFT9	BnaA01g30140D protein.	BnaA06g03150D protein.	0.427
BnaA01g30140D	BnaA09g44510D	A0A078I2M7	A0A078G5F5	BnaA01g30140D protein.	BnaA09g44510D protein.	0.412
BnaA01g30140D	BnaC04g31350D	A0A078I2M7	A0A078HJL2	BnaA01g30140D protein.	BnaC04g31350D protein.	0.422
BnaA01g30140D	BnaUnng00680D	A0A078I2M7	A0A078J354	BnaA01g30140D protein.	BnaUnng00680D protein.	0.422
BnaA01g36980D	BnaA01g29170D	A0A078JEA6	A0A078G0L4	BnaA01g36980D protein.	BnaA01g29170D protein.	0.436
BnaA01g36980D	BnaA06g03150D	A0A078JEA6	A0A078IFT9	BnaA01g36980D protein.	BnaA06g03150D protein.	0.509
BnaA01g36980D	BnaA07g28490D	A0A078JEA6	A0A078HLL6	BnaA01g36980D protein.	BnaA07g28490D protein.	0.413
BnaA01g36980D	BnaA09g44510D	A0A078JEA6	A0A078G5F5	BnaA01g36980D protein.	BnaA09g44510D protein.	0.489
BnaA01g36980D	BnaC04g31350D	A0A078JEA6	A0A078HJL2	BnaA01g36980D protein.	BnaC04g31350D protein.	0.510
BnaA01g36980D	BnaC05g11600D	A0A078JEA6	A0A078HPV8	BnaA01g36980D protein.	BnaC05g11600D protein.	0.472
BnaA01g36980D	BnaC06g31060D	A0A078JEA6	A0A078FHT1	BnaA01g36980D protein.	BnaC06g31060D protein.	0.419
BnaA01g36980D	BnaUnng00680D	A0A078JEA6	A0A078J354	BnaA01g36980D protein.	BnaUnng00680D protein.	0.512
BnaA02g11320D	BnaC01g27340D	A0A078J0M2	A0A078H4L2	BnaA02g11320D protein.	BnaC01g27340D protein.	0.443
BnaA03g54200D	BnaC01g27340D	A0A078GSZ5	A0A078H4L2	BnaA03g54200D protein.	BnaC01g27340D protein.	0.401
BnaA03g54200D	BnaC03g63130D	A0A078GSZ5	A0A078FBK1	BnaA03g54200D protein.	BnaC03g63130D protein.	0.464
BnaA03g54200D	BnaC03g73720D	A0A078GSZ5	A0A078IR30	BnaA03g54200D protein.	BnaC03g73720D protein.	0.404
BnaA03g58810D	BnaA07g08080D	A0A078J8B5	A0A078FS14	BnaA03g58810D protein.	BnaA07g08080D protein.	0.439
BnaA03g58810D	BnaAnng10320D	A0A078J8B5	A0A078IML1	BnaA03g58810D protein.	BnaAnng10320D protein.	0.438