35 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA09g30320D	BnaA09g30320D protein. (987 aa)
	BnaA01g28410D	BnaA01g28410D protein. (1133 aa)
	BnaCnng20190D	BnaCnng20190D protein. (122 aa)
	BnaA06g00200D	BnaA06g00200D protein. (505 aa)
	BnaC01g44400D	BnaC01g44400D protein. (1272 aa)
	BnaC08g21840D	BnaC08g21840D protein. (242 aa)
	BnaC09g41090D	BnaC09g41090D protein. (877 aa)
	BnaC03g26650D	BnaC03g26650D protein. (1245 aa)
	BnaC08g43740D	BnaC08g43740D protein. (720 aa)
	BnaA06g16110D	BnaA06g16110D protein. (343 aa)
	BnaCnng17680D	BnaCnng17680D protein. (558 aa)
	BnaC05g11960D	BnaC05g11960D protein. (1118 aa)
	BnaA06g10370D	BnaA06g10370D protein. (1118 aa)
	BnaA06g10160D	BnaA06g10160D protein. (1571 aa)
	BnaC05g11970D	BnaC05g11970D protein. (247 aa)
	BnaCnng07800D	BnaCnng07800D protein. (389 aa)
	BnaC03g59820D	BnaC03g59820D protein. (846 aa)
	BnaC02g06840D	BnaC02g06840D protein. (868 aa)
	BnaA02g26890D	BnaA02g26890D protein. (400 aa)
	BnaC05g11770D	BnaC05g11770D protein. (920 aa)
	BnaA08g07100D	BnaA08g07100D protein. (1124 aa)
	BnaA08g00370D	BnaA08g00370D protein. (448 aa)
	BnaA09g26910D	BnaA09g26910D protein. (436 aa)
	BnaA06g03120D	BnaA06g03120D protein. (821 aa)
	BnaCnng71150D	BnaCnng71150D protein. (103 aa)
	BnaCnng59410D	BnaCnng59410D protein. (536 aa)
	BnaCnng57230D	BnaCnng57230D protein. (446 aa)
	BnaAnng21410D	BnaAnng21410D protein. (440 aa)
	BnaCnng48170D	BnaCnng48170D protein. (1165 aa)
	BnaC03g64410D	BnaC03g64410D protein. (1103 aa)
	BnaCnng23420D	BnaCnng23420D protein. (543 aa)
	BnaCnng22210D	BnaCnng22210D protein. (399 aa)
	BnaCnng22710D	BnaCnng22710D protein. (63 aa)
	BnaC09g41830D	BnaC09g41830D protein. (645 aa)
	BnaC01g35670D	BnaC01g35670D protein. (1133 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA02g26890D	BnaCnng07800D	A0A078HP92	A0A078HIN2	BnaA02g26890D protein.	BnaCnng07800D protein.	0.489
BnaA02g26890D	BnaCnng22210D	A0A078HP92	A0A078ITJ6	BnaA02g26890D protein.	BnaCnng22210D protein.	0.900
BnaA06g03120D	BnaA06g10160D	A0A078ID86	A0A078HIE8	BnaA06g03120D protein.	BnaA06g10160D protein.	0.614
BnaA06g03120D	BnaC02g06840D	A0A078ID86	A0A078HLA1	BnaA06g03120D protein.	BnaC02g06840D protein.	0.636
BnaA06g03120D	BnaC05g11770D	A0A078ID86	A0A078HSC5	BnaA06g03120D protein.	BnaC05g11770D protein.	0.614
BnaA06g03120D	BnaC09g41090D	A0A078ID86	A0A078FW59	BnaA06g03120D protein.	BnaC09g41090D protein.	0.636
BnaA06g10160D	BnaA06g03120D	A0A078HIE8	A0A078ID86	BnaA06g10160D protein.	BnaA06g03120D protein.	0.614
BnaA06g10160D	BnaA06g16110D	A0A078HIE8	A0A078F0X8	BnaA06g10160D protein.	BnaA06g16110D protein.	0.892
BnaA06g10160D	BnaA09g26910D	A0A078HIE8	A0A078IBS1	BnaA06g10160D protein.	BnaA09g26910D protein.	0.906
BnaA06g10160D	BnaAnng21410D	A0A078HIE8	A0A078JJM3	BnaA06g10160D protein.	BnaAnng21410D protein.	0.906
BnaA06g10160D	BnaC02g06840D	A0A078HIE8	A0A078HLA1	BnaA06g10160D protein.	BnaC02g06840D protein.	0.998
BnaA06g10160D	BnaC05g11770D	A0A078HIE8	A0A078HSC5	BnaA06g10160D protein.	BnaC05g11770D protein.	0.900
BnaA06g10160D	BnaC05g11970D	A0A078HIE8	A0A078H689	BnaA06g10160D protein.	BnaC05g11970D protein.	0.901
BnaA06g10160D	BnaC09g41090D	A0A078HIE8	A0A078FW59	BnaA06g10160D protein.	BnaC09g41090D protein.	0.998
BnaA06g10160D	BnaCnng07800D	A0A078HIE8	A0A078HIN2	BnaA06g10160D protein.	BnaCnng07800D protein.	0.568
BnaA06g10160D	BnaCnng20190D	A0A078HIE8	A0A078IMA0	BnaA06g10160D protein.	BnaCnng20190D protein.	0.993
BnaA06g10160D	BnaCnng22710D	A0A078HIE8	A0A078IRW5	BnaA06g10160D protein.	BnaCnng22710D protein.	0.996
BnaA06g10160D	BnaCnng23420D	A0A078HIE8	A0A078IUW5	BnaA06g10160D protein.	BnaCnng23420D protein.	0.845
BnaA06g16110D	BnaA06g10160D	A0A078F0X8	A0A078HIE8	BnaA06g16110D protein.	BnaA06g10160D protein.	0.892
BnaA06g16110D	BnaA09g26910D	A0A078F0X8	A0A078IBS1	BnaA06g16110D protein.	BnaA09g26910D protein.	0.834