37 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA09g38860D	40S ribosomal protein S27. (86 aa)
	BnaC03g72450D	BnaC03g72450D protein. (157 aa)
	BnaC09g39060D	BnaC09g39060D protein. (58 aa)
	BnaC01g30810D	BnaC01g30810D protein; Belongs to the eukaryotic ribosomal protein eL42 family. (153 aa)
	BnaA09g39760D	BnaA04g27270D protein. (157 aa)
	BnaC03g59800D	BnaC03g59800D protein; Belongs to the eukaryotic ribosomal protein eL42 family. (130 aa)
	BnaC04g28820D	BnaC04g28820D protein; Belongs to the eukaryotic ribosomal protein eL42 family. (127 aa)
	BnaA09g29200D	PRA1 family protein; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments. Belongs to the PRA1 family. (230 aa)
	BnaA01g23850D	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family. (137 aa)
	BnaC07g12420D	BnaC07g12420D protein. (139 aa)
	BnaC04g04420D	40S ribosomal protein S27. (116 aa)
	BnaA09g02840D	40S ribosomal protein S27. (88 aa)
	BnaC04g50400D	40S ribosomal protein S27. (91 aa)
	BnaA07g09990D	BnaA07g09990D protein. (156 aa)
	BnaC05g37290D	Ribosomal protein L37; Binds to the 23S rRNA. (115 aa)
	BnaA02g30880D	BnaA02g30880D protein. (205 aa)
	BnaC02g38320D	40S ribosomal protein S27. (135 aa)
	BnaC07g21130D	BnaC07g21130D protein. (71 aa)
	BnaA04g26360D	40S ribosomal protein S27. (86 aa)
	BnaA02g19870D	BnaA02g19870D protein. (138 aa)
	BnaA07g09380D	BnaA07g09380D protein. (141 aa)
	BnaA09g38330D	BnaA09g38330D protein. (145 aa)
	BnaA08g20480D	BnaA08g20480D protein. (87 aa)
	BnaC04g22220D	BnaC04g22220D protein. (133 aa)
	BnaAnng08010D	40S ribosomal protein S27. (136 aa)
	BnaA05g14980D	Ribosomal protein L37; Binds to the 23S rRNA. (114 aa)
	BnaCnng13460D	BnaCnng13460D protein. (519 aa)
	BnaCnng13430D	40S ribosomal protein S27. (125 aa)
	BnaCnng17210D	BnaCnng17210D protein; Belongs to the eukaryotic ribosomal protein eL42 family. (127 aa)
	BnaA03g56930D	40S ribosomal protein S27. (93 aa)
	BnaC07g49260D	40S ribosomal protein S27. (132 aa)
	BnaCnng33200D	BnaCnng33200D protein. (139 aa)
	BnaC06g42830D	BnaC06g42830D protein. (125 aa)
	BnaCnng54330D	40S ribosomal protein S27. (120 aa)
	BnaCnng66410D	Ribosomal protein L37; Binds to the 23S rRNA. (112 aa)
	BnaCnng67600D	Ribosomal protein L37; Binds to the 23S rRNA. (115 aa)
	rpl33	BnaA06g19470D protein. (66 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g23850D	BnaA02g19870D	A0A078FYC8	A0A078HL45	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	BnaA02g19870D protein.	0.970
BnaA01g23850D	BnaA03g56930D	A0A078FYC8	A0A078IVB1	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein S27.	0.730
BnaA01g23850D	BnaA04g26360D	A0A078FYC8	A0A078HJP4	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein S27.	0.730
BnaA01g23850D	BnaA05g14980D	A0A078FYC8	A0A078I705	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.970
BnaA01g23850D	BnaA07g09990D	A0A078FYC8	A0A078GMF0	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	BnaA07g09990D protein.	0.976
BnaA01g23850D	BnaA08g20480D	A0A078FYC8	A0A078HUN2	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	BnaA08g20480D protein.	0.976
BnaA01g23850D	BnaA09g02840D	A0A078FYC8	A0A078G4S8	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein S27.	0.730
BnaA01g23850D	BnaA09g38330D	A0A078FYC8	A0A078HTJ8	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	BnaA09g38330D protein.	0.990
BnaA01g23850D	BnaA09g38860D	A0A078FYC8	A0A078C6I6	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein S27.	0.730
BnaA01g23850D	BnaA09g39760D	A0A078FYC8	A0A078FAH6	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	BnaA04g27270D protein.	0.976
BnaA01g23850D	BnaAnng08010D	A0A078FYC8	A0A078I4W0	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein S27.	0.839
BnaA01g23850D	BnaC02g38320D	A0A078FYC8	A0A078HD53	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein S27.	0.730
BnaA01g23850D	BnaC03g72450D	A0A078FYC8	A0A078D4W1	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	BnaC03g72450D protein.	0.976
BnaA01g23850D	BnaC04g04420D	A0A078FYC8	A0A078G2L2	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein S27.	0.627
BnaA01g23850D	BnaC04g22220D	A0A078FYC8	A0A078HZA4	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	BnaC04g22220D protein.	0.990
BnaA01g23850D	BnaC04g50400D	A0A078FYC8	A0A078GL95	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein S27.	0.730
BnaA01g23850D	BnaC05g37290D	A0A078FYC8	A0A078GZX4	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.970
BnaA01g23850D	BnaC06g42830D	A0A078FYC8	A0A078JGK6	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	BnaC06g42830D protein.	0.990
BnaA01g23850D	BnaC07g49260D	A0A078FYC8	A0A078IWV1	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein S27.	0.866
BnaA01g23850D	BnaCnng13430D	A0A078FYC8	A0A078I960	BnaA01g23850D protein; Belongs to the eukaryotic ribosomal protein eL42 family.	40S ribosomal protein S27.	0.866