18 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC07g50070D	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (274 aa)
	BnaA01g34650D	BnaA01g34650D protein. (179 aa)
	BnaCnng35130D	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (186 aa)
	BnaA05g34620D	BnaA05g34620D protein; Belongs to the universal ribosomal protein uL23 family. (154 aa)
	BnaA09g34900D	BnaA09g34900D protein; Belongs to the universal ribosomal protein uL23 family. (154 aa)
	BnaC01g20070D	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (318 aa)
	BnaA03g54430D	BnaA03g54430D protein. (176 aa)
	BnaA09g51640D	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (133 aa)
	BnaC04g06030D	BnaC04g06030D protein; Belongs to the universal ribosomal protein uL23 family. (179 aa)
	BnaC04g06100D	BnaC03g22120D protein; Belongs to the universal ribosomal protein uL23 family. (154 aa)
	BnaC01g41720D	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (178 aa)
	BnaC07g34290D	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (186 aa)
	BnaA03g18630D	BnaA03g18630D protein; Belongs to the universal ribosomal protein uL23 family. (206 aa)
	BnaC07g51330D	BnaC07g51330D protein. (178 aa)
	BnaAnng13420D	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (239 aa)
	BnaC08g47880D	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (260 aa)
	BnaAnng11460D	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (133 aa)
	BnaA08g30370D	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (237 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g34650D	BnaA03g54430D	A0A078JEY2	A0A078H2H5	BnaA01g34650D protein.	BnaA03g54430D protein.	0.900
BnaA01g34650D	BnaC07g51330D	A0A078JEY2	A0A078JF07	BnaA01g34650D protein.	BnaC07g51330D protein.	0.900
BnaA03g18630D	BnaA08g30370D	A0A078F7K5	A0A078IUG9	BnaA03g18630D protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930
BnaA03g18630D	BnaA09g51640D	A0A078F7K5	A0A078J2A2	BnaA03g18630D protein; Belongs to the universal ribosomal protein uL23 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.990
BnaA03g18630D	BnaAnng11460D	A0A078F7K5	A0A078ISS3	BnaA03g18630D protein; Belongs to the universal ribosomal protein uL23 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.990
BnaA03g18630D	BnaAnng13420D	A0A078F7K5	A0A078IXB6	BnaA03g18630D protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930
BnaA03g18630D	BnaC01g20070D	A0A078F7K5	A0A078HPM9	BnaA03g18630D protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930
BnaA03g18630D	BnaC01g41720D	A0A078F7K5	A0A078JAE5	BnaA03g18630D protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930
BnaA03g18630D	BnaC07g34290D	A0A078F7K5	A0A078DTE3	BnaA03g18630D protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930
BnaA03g18630D	BnaC07g50070D	A0A078F7K5	A0A078J9K0	BnaA03g18630D protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930
BnaA03g18630D	BnaC08g47880D	A0A078F7K5	A0A078ILM4	BnaA03g18630D protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930
BnaA03g18630D	BnaCnng35130D	A0A078F7K5	A0A078J864	BnaA03g18630D protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930
BnaA03g54430D	BnaA01g34650D	A0A078H2H5	A0A078JEY2	BnaA03g54430D protein.	BnaA01g34650D protein.	0.900
BnaA03g54430D	BnaC07g51330D	A0A078H2H5	A0A078JF07	BnaA03g54430D protein.	BnaC07g51330D protein.	0.900
BnaA05g34620D	BnaA08g30370D	A0A078IW24	A0A078IUG9	BnaA05g34620D protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930
BnaA05g34620D	BnaA09g51640D	A0A078IW24	A0A078J2A2	BnaA05g34620D protein; Belongs to the universal ribosomal protein uL23 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.990
BnaA05g34620D	BnaAnng11460D	A0A078IW24	A0A078ISS3	BnaA05g34620D protein; Belongs to the universal ribosomal protein uL23 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.990
BnaA05g34620D	BnaAnng13420D	A0A078IW24	A0A078IXB6	BnaA05g34620D protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930
BnaA05g34620D	BnaC01g20070D	A0A078IW24	A0A078HPM9	BnaA05g34620D protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930
BnaA05g34620D	BnaC01g41720D	A0A078IW24	A0A078JAE5	BnaA05g34620D protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930