178 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaCnng19890D	Germin-like protein. (221 aa)
	BnaAnng10700D	BnaAnng10700D protein. (308 aa)
	BnaA03g56080D	Germin-like protein. (211 aa)
	BnaA05g33280D	BnaA05g33280D protein. (829 aa)
	BnaCnng23470D	BnaCnng23470D protein. (121 aa)
	BnaA08g30120D	Germin-like protein. (220 aa)
	BnaA02g36400D	BnaA02g36400D protein. (429 aa)
	BnaC08g49700D	BnaC08g49700D protein. (57 aa)
	BnaC01g41980D	BnaC01g41980D protein. (428 aa)
	BnaA05g34480D	BnaA05g34480D protein; Belongs to the pirin family. (296 aa)
	BnaC04g37620D	BnaC04g37620D protein. (861 aa)
	BnaCnng28630D	BnaCnng28630D protein. (484 aa)
	BnaC01g42610D	BnaC01g42610D protein. (741 aa)
	BnaA05g33470D	BnaA05g33470D protein. (433 aa)
	BnaC08g48910D	BnaC08g48910D protein; Belongs to the pirin family. (278 aa)
	BnaCnng33280D	BnaCnng33280D protein. (63 aa)
	BnaC08g48920D	BnaC08g48920D protein; Belongs to the pirin family. (309 aa)
	BnaCnng38930D	BnaCnng38930D protein. (180 aa)
	BnaA06g39490D	Germin-like protein. (218 aa)
	BnaA01g36910D	BnaA01g36910D protein. (530 aa)
	BnaAnng16170D	BnaAnng16170D protein. (138 aa)
	BnaAnng17920D	BnaAnng17920D protein. (179 aa)
	BnaCnng40090D	BnaCnng40090D protein. (666 aa)
	BnaCnng37680D	BnaCnng37680D protein. (328 aa)
	BnaA05g35160D	BnaA05g35160D protein. (137 aa)
	BnaC02g45700D	BnaC02g45700D protein. (102 aa)
	BnaC04g54760D	BnaC04g54760D protein. (356 aa)
	BnaCnng38920D	BnaCnng38920D protein. (122 aa)
	BnaCnng47880D	BnaCnng47880D protein. (285 aa)
	BnaCnng48270D	BnaCnng48270D protein. (733 aa)
	BnaCnng45430D	BnaCnng45430D protein. (674 aa)
	BnaCnng47760D	BnaCnng47760D protein. (114 aa)
	BnaCnng48280D	BnaCnng48280D protein. (759 aa)
	BnaCnng47090D	BnaCnng47090D protein. (532 aa)
	BnaC07g48660D	BnaC07g48660D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family. (456 aa)
	BnaCnng52940D	Germin-like protein. (219 aa)
	BnaA03g56660D	BnaA03g56660D protein. (236 aa)
	BnaCnng58970D	BnaCnng58970D protein. (119 aa)
	BnaC05g02160D	BnaC05g02160D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family. (457 aa)
	BnaA07g37570D	Germin-like protein. (219 aa)
	BnaC08g47570D	Germin-like protein. (191 aa)
	BnaCnng71440D	BnaCnng71440D protein. (356 aa)
	SOS1.1	Salt-overly-sensitive 1.1. (1139 aa)
	BnaAnng37930D	BnaAnng37930D protein. (356 aa)
	BnaC03g48220D	BnaC03g48220D protein. (191 aa)
	BnaC07g34060D	BnaC07g34060D protein. (300 aa)
	BnaC08g44310D	BnaC08g44310D protein. (341 aa)
	BnaC07g34100D	BnaC07g34100D protein. (302 aa)
	BnaC09g42720D	BnaC09g42720D protein. (714 aa)
	BnaC08g43570D	BnaC08g43570D protein. (446 aa)
	BnaC08g43590D	BnaC08g43590D protein. (175 aa)
	BnaC06g13030D	Germin-like protein. (219 aa)
	BnaC04g12200D	BnaC04g12200D protein. (137 aa)
	BnaC06g24160D	Germin-like protein. (207 aa)
	BnaA09g40820D	BnaA09g40820D protein. (877 aa)
	BnaA09g39580D	Germin-like protein. (220 aa)
	BnaA09g40630D	BnaA09g40630D protein; Belongs to the mannose-6-phosphate isomerase type 1 family. (329 aa)
	BnaC04g12570D	BnaC04g12570D protein. (114 aa)
	BnaA02g12790D	BnaA02g12790D protein. (444 aa)
	BnaA03g52140D	BnaA03g52140D protein. (656 aa)
	BnaA08g13680D	BnaA08g13680D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family. (493 aa)
	BnaA10g07330D	BnaA10g07330D protein. (699 aa)
	BnaA10g07180D	BnaA10g07180D protein. (216 aa)
	BnaA02g22360D	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). (259 aa)
	BnaC05g01100D	Germin-like protein. (218 aa)
	BnaC05g00010D	BnaC05g00010D protein. (118 aa)
	BnaC05g00380D	BnaC05g00380D protein. (427 aa)
	BnaA08g29100D	BnaA08g29100D protein. (328 aa)
	BnaA02g22500D	BnaA02g22500D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family. (462 aa)
	BnaA04g11540D	Germin-like protein. (223 aa)
	BnaC04g15710D	BnaC04g15710D protein. (472 aa)
	BnaC03g30470D	BnaC03g30470D protein. (198 aa)
	BnaA06g35400D	BnaA06g35400D protein; Belongs to the pirin family. (196 aa)
	BnaC05g14660D	Germin-like protein. (214 aa)
	BnaC04g02730D	BnaC04g02730D protein; Belongs to the pirin family. (318 aa)
	BnaAnng02990D	Germin-like protein. (229 aa)
	BnaAnng24620D	BnaAnng24620D protein. (432 aa)
	BnaC09g30630D	BnaC09g30630D protein. (698 aa)
	BnaA04g18910D	BnaA04g18910D protein. (137 aa)
	BnaC05g14170D	BnaC05g14170D protein. (276 aa)
	BnaAnng02980D	Germin-like protein. (218 aa)
	BnaC09g29350D	BnaC09g29350D protein. (600 aa)
	BnaA01g33610D	BnaA01g33610D protein. (97 aa)
	BnaA09g04150D	Germin-like protein. (217 aa)
	BnaC04g36270D	BnaC04g36270D protein. (714 aa)
	BnaC04g36890D	BnaC04g36890D protein. (745 aa)
	BnaC09g00360D	BnaC09g00360D protein. (198 aa)
	BnaA09g01190D	BnaA09g01190D protein. (198 aa)
	BnaC08g13660D	Germin-like protein. (220 aa)
	BnaC01g38860D	Germin-like protein. (226 aa)
	BnaA06g36310D	BnaA06g36310D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family. (462 aa)
	BnaA09g44390D	Germin-like protein. (214 aa)
	BnaA06g02710D	BnaA06g02710D protein; Belongs to the pirin family. (311 aa)
	BnaA06g02110D	Germin-like protein. (211 aa)
	BnaC08g42670D	Germin-like protein. (216 aa)
	BnaC07g31490D	Germin-like protein. (204 aa)
	BnaA08g15380D	BnaA08g15380D protein. (554 aa)
	BnaA06g12620D	BnaA06g12620D protein. (276 aa)
	BnaA01g22170D	BnaA01g22170D protein. (801 aa)
	BnaC09g42460D	BnaC09g42460D protein. (719 aa)
	BnaA06g13160D	Germin-like protein. (214 aa)
	BnaC05g44570D	BnaC05g44570D protein. (179 aa)
	BnaA02g10440D	BnaA02g10440D protein. (711 aa)
	BnaA09g36100D	BnaA09g36100D protein. (220 aa)
	BnaCnng06010D	BnaCnng06010D protein. (830 aa)
	BnaA05g31360D	BnaA05g31360D protein. (164 aa)
	BnaA06g25170D	BnaA06g25170D protein. (607 aa)
	BnaC05g44560D	BnaC05g44560D protein. (164 aa)
	BnaA01g06670D	BnaA01g06670D protein. (694 aa)
	BnaC01g40130D	BnaC01g40130D protein. (96 aa)
	BnaA02g09790D	BnaA02g09790D protein. (621 aa)
	BnaA02g09890D	BnaA02g09890D protein. (452 aa)
	BnaA01g19100D	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). (195 aa)
	BnaA08g26300D	Germin-like protein. (219 aa)
	BnaA09g51410D	BnaA09g51410D protein. (131 aa)
	BnaA09g16630D	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). (180 aa)
	BnaC03g41750D	BnaC03g41750D protein. (171 aa)
	BnaA07g03930D	BnaA07g03930D protein. (818 aa)
	BnaA02g07990D	BnaA02g07990D protein. (721 aa)
	BnaA09g50780D	BnaA09g50780D protein. (496 aa)
	BnaC05g12210D	BnaC05g12210D protein. (722 aa)
	BnaA06g36090D	BnaA06g36090D protein. (666 aa)
	BnaCnng07540D	BnaCnng07540D protein. (153 aa)
	BnaC03g62660D	BnaC03g62660D protein. (605 aa)
	BnaCnng07520D	Germin-like protein. (88 aa)
	BnaA01g24560D	BnaA01g24560D protein. (486 aa)
	BnaA01g08210D	BnaA01g08210D protein. (112 aa)
	BnaA04g15220D	BnaA04g15220D protein. (647 aa)
	BnaA09g48170D	BnaA09g48170D protein. (190 aa)
	BnaA01g08350D	BnaA01g08350D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family. (489 aa)
	BnaA09g17910D	BnaA09g17910D protein. (657 aa)
	BnaA01g32870D	BnaA01g32870D protein. (432 aa)
	BnaA09g41300D	BnaA09g41300D protein. (715 aa)
	BnaA09g41750D	BnaA09g41750D protein. (737 aa)
	BnaA07g00650D	BnaA07g00650D protein. (1081 aa)
	BnaA05g30230D	BnaA05g30230D protein. (448 aa)
	BnaC01g21260D	BnaC01g21260D protein. (281 aa)
	BnaA06g10680D	BnaA06g10680D protein. (722 aa)
	BnaC08g09720D	Germin-like protein. (220 aa)
	BnaA04g14740D	BnaA04g14740D protein. (860 aa)
	BnaC03g61870D	BnaC03g61870D protein. (577 aa)
	BnaC03g48460D	BnaC03g48460D protein. (652 aa)
	BnaC06g03740D	BnaC06g03740D protein; Belongs to the pirin family. (311 aa)
	BnaC08g09710D	Germin-like protein. (220 aa)
	BnaC04g31260D	Germin-like protein. (222 aa)
	BnaA06g16940D	BnaA06g16940D protein. (706 aa)
	BnaC01g09900D	BnaC01g09900D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family. (475 aa)
	BnaA04g14030D	BnaA04g14030D protein. (736 aa)
	BnaA03g50250D	BnaA03g50250D protein. (741 aa)
	BnaA01g31980D	Germin-like protein. (226 aa)
	BnaC02g13840D	BnaC02g13840D protein. (458 aa)
	BnaC05g46980D	BnaC05g46980D protein. (308 aa)
	BnaC04g01250D	BnaC04g01250D protein. (701 aa)
	BnaC02g09080D	BnaC02g09080D protein. (43 aa)
	BnaC02g17130D	Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family. (444 aa)
	BnaC03g24040D	BnaC03g24040D protein; Belongs to the pirin family. (321 aa)
	BnaA03g53540D	BnaA03g53540D protein. (176 aa)
	BnaC05g47340D	BnaC05g47340D protein. (95 aa)
	BnaA01g17980D	BnaA01g17980D protein. (299 aa)
	BnaC05g48220D	BnaC05g48220D protein. (436 aa)
	BnaA02g04960D	Germin-like protein. (211 aa)
	BnaA02g04990D	Germin-like protein. (212 aa)
	BnaCnng12140D	BnaCnng12140D protein. (376 aa)
	BnaA02g04970D	Germin-like protein. (219 aa)
	BnaA04g14530D	BnaA04g14530D protein. (703 aa)
	BnaCnng14590D	BnaCnng14590D protein. (244 aa)
	BnaA01g27850D	BnaA01g27850D protein. (760 aa)
	BnaC01g34940D	BnaC01g34940D protein. (226 aa)
	BnaC01g34960D	BnaC01g34960D protein. (734 aa)
	BnaA01g27860D	BnaA01g27860D protein. (743 aa)
	BnaC04g43140D	BnaC04g43140D protein. (311 aa)
	BnaA01g22650D	BnaA01g22650D protein. (190 aa)
	BnaA09g55210D	BnaA09g55210D protein. (242 aa)
	BnaCnng19740D	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). (180 aa)
	BnaC04g52520D	BnaC04g52520D protein. (240 aa)
	BnaC03g34440D	Germin-like protein. (218 aa)
	BnaA05g33100D	BnaA05g33100D protein. (95 aa)
	BnaA10g06480D	BnaA10g06480D protein. (720 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g08210D	BnaA04g18910D	A0A078H9T4	A0A078G1H2	BnaA01g08210D protein.	BnaA04g18910D protein.	0.509
BnaA01g08210D	BnaA05g35160D	A0A078H9T4	A0A078JBH2	BnaA01g08210D protein.	BnaA05g35160D protein.	0.518
BnaA01g08210D	BnaAnng16170D	A0A078H9T4	A0A078J7Z0	BnaA01g08210D protein.	BnaAnng16170D protein.	0.517
BnaA01g08210D	BnaC04g12200D	A0A078H9T4	A0A078FCU3	BnaA01g08210D protein.	BnaC04g12200D protein.	0.518
BnaA01g08210D	BnaC04g12570D	A0A078H9T4	A0A078FGY5	BnaA01g08210D protein.	BnaC04g12570D protein.	0.466
BnaA01g08210D	BnaC04g43140D	A0A078H9T4	A0A078ICE7	BnaA01g08210D protein.	BnaC04g43140D protein.	0.524
BnaA01g08350D	BnaA01g24560D	A0A078HBQ3	A0A078H9R3	BnaA01g08350D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	BnaA01g24560D protein.	0.401
BnaA01g08350D	BnaA02g22500D	A0A078HBQ3	A0A078FRG0	BnaA01g08350D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	BnaA02g22500D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	0.524
BnaA01g08350D	BnaA06g36310D	A0A078HBQ3	A0A078GA98	BnaA01g08350D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	BnaA06g36310D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	0.523
BnaA01g08350D	BnaC04g15710D	A0A078HBQ3	A0A078FTS7	BnaA01g08350D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	BnaC04g15710D protein.	0.402
BnaA01g08350D	BnaC07g48660D	A0A078HBQ3	A0A078JJC3	BnaA01g08350D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	BnaC07g48660D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	0.523
BnaA01g08350D	BnaCnng28630D	A0A078HBQ3	A0A078J095	BnaA01g08350D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	BnaCnng28630D protein.	0.401
BnaA01g08350D	BnaCnng58970D	A0A078HBQ3	A0A078JNT2	BnaA01g08350D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	BnaCnng58970D protein.	0.529
BnaA01g17980D	BnaC07g34100D	A0A078HZB6	A0A078F8J4	BnaA01g17980D protein.	BnaC07g34100D protein.	0.900
BnaA01g19100D	BnaA02g22360D	A0A078GW61	A0A078FPR7	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	0.901
BnaA01g19100D	BnaCnng19740D	A0A078GW61	A0A078IIF6	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	0.901
BnaA01g24560D	BnaA01g08350D	A0A078H9R3	A0A078HBQ3	BnaA01g24560D protein.	BnaA01g08350D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	0.401
BnaA01g24560D	BnaA02g22500D	A0A078H9R3	A0A078FRG0	BnaA01g24560D protein.	BnaA02g22500D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	0.508
BnaA01g24560D	BnaA06g36310D	A0A078H9R3	A0A078GA98	BnaA01g24560D protein.	BnaA06g36310D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	0.492
BnaA01g24560D	BnaA08g13680D	A0A078H9R3	A0A078FMU9	BnaA01g24560D protein.	BnaA08g13680D protein; Seed storage protein; Belongs to the 11S seed storage protein (globulins) family.	0.401