65 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA05g19790D	BnaA05g19790D protein. (613 aa)
	BnaA01g28170D	BnaA01g28170D protein. (588 aa)
	BnaA05g19780D	BnaA05g19780D protein. (559 aa)
	BnaA04g12330D	Acetyl-coenzyme A synthetase. (746 aa)
	BnaC03g44430D	BnaC03g44430D protein. (716 aa)
	BnaC04g29100D	BnaC04g29100D protein. (725 aa)
	BnaC05g23530D	BnaC05g23530D protein. (556 aa)
	BnaA06g15270D	BnaA06g15270D protein. (548 aa)
	BnaA06g16270D	BnaA06g16270D protein. (514 aa)
	BnaA07g25210D	BnaA07g25210D protein. (556 aa)
	BnaA07g25490D	BnaA07g25490D protein. (553 aa)
	BnaC09g11030D	BnaC09g11030D protein. (786 aa)
	BnaC03g74060D	BnaC03g74060D protein. (748 aa)
	BnaC05g51350D	BnaC05g51350D protein. (666 aa)
	BnaA09g19900D	BnaA09g19900D protein. (539 aa)
	BnaA03g36140D	BnaA03g36140D protein. (444 aa)
	BnaA01g13470D	BnaA01g13470D protein. (667 aa)
	BnaC03g34500D	BnaC03g34500D protein. (696 aa)
	BnaC02g42520D	BnaC02g42520D protein. (459 aa)
	BnaA04g26960D	BnaA04g26960D protein. (660 aa)
	BnaA09g19890D	BnaA09g19890D protein. (542 aa)
	BnaA05g15310D	BnaA05g15310D protein. (551 aa)
	BnaA08g07100D	BnaA08g07100D protein. (1124 aa)
	BnaC09g26090D	BnaC09g26090D protein. (733 aa)
	BnaC06g26980D	BnaC06g26980D protein. (557 aa)
	BnaC06g27280D	BnaC06g27280D protein. (553 aa)
	BnaC09g21910D	BnaC09g21910D protein. (539 aa)
	BnaA02g17630D	BnaA02g17630D protein. (550 aa)
	BnaC09g21890D	BnaC09g21890D protein. (542 aa)
	BnaCnng41240D	BnaCnng41240D protein. (548 aa)
	BnaCnng40810D	BnaCnng40810D protein. (724 aa)
	BnaCnng43930D	BnaCnng43930D protein. (597 aa)
	BnaAnng19690D	BnaAnng19690D protein. (960 aa)
	BnaA03g57930D	BnaA03g57930D protein. (721 aa)
	BnaAnng22570D	BnaAnng22570D protein. (512 aa)
	BnaCnng48170D	BnaCnng48170D protein. (1165 aa)
	BnaC03g74270D	BnaC03g74270D protein. (353 aa)
	BnaA03g57590D	BnaA03g57590D protein. (718 aa)
	BnaA05g36600D	BnaA05g36600D protein. (553 aa)
	BnaC08g48460D	BnaC08g48460D protein. (514 aa)
	BnaAnng37600D	BnaAnng37600D protein. (459 aa)
	BnaUnng04240D	BnaUnng04240D protein. (370 aa)
	BnaCnng09670D	BnaCnng09670D protein. (552 aa)
	BnaA02g18500D	BnaA02g18500D protein. (552 aa)
	BnaC08g19280D	BnaC08g19280D protein. (552 aa)
	BnaC08g19290D	BnaC08g19290D protein. (423 aa)
	BnaC08g19270D	BnaC08g19270D protein. (557 aa)
	BnaC08g19310D	BnaC08g19310D protein. (553 aa)
	BnaC06g07200D	BnaC06g07200D protein. (721 aa)
	BnaC07g15330D	BnaC07g15330D protein. (543 aa)
	BnaC05g15870D	BnaC05g15870D protein. (550 aa)
	BnaC03g42000D	BnaC03g42000D protein. (574 aa)
	BnaC05g15830D	BnaC05g15830D protein. (580 aa)
	BnaC05g15810D	BnaC05g15810D protein. (514 aa)
	BnaA06g14470D	BnaA06g14470D protein. (552 aa)
	BnaA06g14430D	BnaA06g14430D protein. (530 aa)
	BnaA06g14440D	BnaA06g14440D protein. (1149 aa)
	BnaC05g37220D	BnaC05g37220D protein. (603 aa)
	BnaA05g16170D	BnaA05g16170D protein. (666 aa)
	BnaC04g51420D	BnaC04g51420D protein. (660 aa)
	BnaA05g31340D	BnaA05g31340D protein. (687 aa)
	BnaA07g02760D	BnaA07g02760D protein. (585 aa)
	BnaA06g00400D	BnaA06g00400D protein. (721 aa)
	BnaC01g24110D	BnaC01g24110D protein. (951 aa)
	BnaA05g19760D	BnaA05g19760D protein. (552 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g13470D	BnaA03g57590D	A0A078IEP9	A0A078JNN1	BnaA01g13470D protein.	BnaA03g57590D protein.	0.671
BnaA01g13470D	BnaA03g57930D	A0A078IEP9	A0A078JF88	BnaA01g13470D protein.	BnaA03g57930D protein.	0.753
BnaA01g13470D	BnaA04g26960D	A0A078IEP9	A0A078IPS6	BnaA01g13470D protein.	BnaA04g26960D protein.	0.611
BnaA01g13470D	BnaA05g16170D	A0A078IEP9	A0A078GS86	BnaA01g13470D protein.	BnaA05g16170D protein.	0.609
BnaA01g13470D	BnaA05g31340D	A0A078IEP9	A0A078GME1	BnaA01g13470D protein.	BnaA05g31340D protein.	0.626
BnaA01g13470D	BnaA08g07100D	A0A078IEP9	A0A078HT76	BnaA01g13470D protein.	BnaA08g07100D protein.	0.508
BnaA01g13470D	BnaC03g34500D	A0A078IEP9	A0A078ILR6	BnaA01g13470D protein.	BnaC03g34500D protein.	0.624
BnaA01g13470D	BnaC03g44430D	A0A078IEP9	A0A078FQF4	BnaA01g13470D protein.	BnaC03g44430D protein.	0.753
BnaA01g13470D	BnaC03g74060D	A0A078IEP9	A0A078IT86	BnaA01g13470D protein.	BnaC03g74060D protein.	0.671
BnaA01g13470D	BnaC04g29100D	A0A078IEP9	A0A078FHP6	BnaA01g13470D protein.	BnaC04g29100D protein.	0.669
BnaA01g13470D	BnaC04g51420D	A0A078IEP9	A0A078GQB5	BnaA01g13470D protein.	BnaC04g51420D protein.	0.611
BnaA01g13470D	BnaC09g26090D	A0A078IEP9	A0A078HSY9	BnaA01g13470D protein.	BnaC09g26090D protein.	0.603
BnaA01g13470D	BnaCnng48170D	A0A078IEP9	A0A078JIS2	BnaA01g13470D protein.	BnaCnng48170D protein.	0.508
BnaA01g28170D	BnaA04g12330D	A0A078G0V4	A0A078FU33	BnaA01g28170D protein.	Acetyl-coenzyme A synthetase.	0.465
BnaA01g28170D	BnaA06g00400D	A0A078G0V4	A0A078GFY5	BnaA01g28170D protein.	BnaA06g00400D protein.	0.465
BnaA01g28170D	BnaA08g07100D	A0A078G0V4	A0A078HT76	BnaA01g28170D protein.	BnaA08g07100D protein.	0.751
BnaA01g28170D	BnaC01g24110D	A0A078G0V4	A0A078GB79	BnaA01g28170D protein.	BnaC01g24110D protein.	0.465
BnaA01g28170D	BnaC05g37220D	A0A078G0V4	A0A078GUH1	BnaA01g28170D protein.	BnaC05g37220D protein.	0.900
BnaA01g28170D	BnaC06g07200D	A0A078G0V4	A0A078H6D6	BnaA01g28170D protein.	BnaC06g07200D protein.	0.465
BnaA01g28170D	BnaCnng40810D	A0A078G0V4	A0A078JCY4	BnaA01g28170D protein.	BnaCnng40810D protein.	0.465