60 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA09g19890D	BnaA09g19890D protein. (542 aa)
	BnaC02g42510D	BnaC02g42510D protein. (154 aa)
	BnaA09g19900D	BnaA09g19900D protein. (539 aa)
	BnaA05g19760D	BnaA05g19760D protein. (552 aa)
	BnaA03g36140D	BnaA03g36140D protein. (444 aa)
	BnaA04g26960D	BnaA04g26960D protein. (660 aa)
	BnaCnng25720D	BnaCnng25720D protein. (187 aa)
	BnaC05g51350D	BnaC05g51350D protein. (666 aa)
	BnaC03g40840D	BnaC03g40840D protein. (584 aa)
	BnaC01g24110D	BnaC01g24110D protein. (951 aa)
	BnaA07g02760D	BnaA07g02760D protein. (585 aa)
	BnaC06g07860D	BnaC06g07860D protein. (272 aa)
	BnaC03g42020D	BnaC03g42020D protein. (183 aa)
	BnaC08g19310D	BnaC08g19310D protein. (553 aa)
	BnaC08g19270D	BnaC08g19270D protein. (557 aa)
	BnaC08g19280D	BnaC08g19280D protein. (552 aa)
	BnaC02g06530D	BnaC02g06530D protein. (166 aa)
	BnaA02g18500D	BnaA02g18500D protein. (552 aa)
	BnaC09g21890D	BnaC09g21890D protein. (542 aa)
	BnaA02g17630D	BnaA02g17630D protein. (550 aa)
	BnaA09g10680D	BnaA09g10680D protein. (540 aa)
	BnaC09g21910D	BnaC09g21910D protein. (539 aa)
	BnaC06g27280D	BnaC06g27280D protein. (553 aa)
	BnaC06g26980D	BnaC06g26980D protein. (557 aa)
	BnaC04g51420D	BnaC04g51420D protein. (660 aa)
	BnaC01g35460D	BnaC01g35460D protein. (510 aa)
	BnaA05g16170D	BnaA05g16170D protein. (666 aa)
	BnaC05g37220D	BnaC05g37220D protein. (603 aa)
	BnaA06g14440D	BnaA06g14440D protein. (1149 aa)
	BnaA06g14430D	BnaA06g14430D protein. (530 aa)
	BnaA06g14470D	BnaA06g14470D protein. (552 aa)
	BnaA06g20370D	BnaA06g20370D protein. (552 aa)
	BnaC07g15330D	BnaC07g15330D protein. (543 aa)
	BnaC05g15870D	BnaC05g15870D protein. (550 aa)
	BnaC05g15810D	BnaC05g15810D protein. (514 aa)
	BnaC05g15830D	BnaC05g15830D protein. (580 aa)
	BnaC03g42000D	BnaC03g42000D protein. (574 aa)
	BnaC04g00320D	BnaC04g00320D protein. (431 aa)
	BnaA05g19780D	BnaA05g19780D protein. (559 aa)
	BnaA07g25490D	BnaA07g25490D protein. (553 aa)
	BnaA07g25210D	BnaA07g25210D protein. (556 aa)
	BnaA06g16270D	BnaA06g16270D protein. (514 aa)
	BnaA06g15270D	BnaA06g15270D protein. (548 aa)
	BnaC05g23530D	BnaC05g23530D protein. (556 aa)
	BnaA02g12290D	BnaA02g12290D protein. (212 aa)
	BnaC08g48460D	BnaC08g48460D protein. (514 aa)
	BnaCnng62450D	BnaCnng62450D protein. (412 aa)
	BnaAnng37600D	BnaAnng37600D protein. (459 aa)
	BnaCnng09670D	BnaCnng09670D protein. (552 aa)
	BnaA05g36600D	BnaA05g36600D protein. (553 aa)
	BnaCnng48170D	BnaCnng48170D protein. (1165 aa)
	BnaAnng22570D	BnaAnng22570D protein. (512 aa)
	BnaCnng43930D	BnaCnng43930D protein. (597 aa)
	BnaCnng41240D	BnaCnng41240D protein. (548 aa)
	BnaA01g28170D	BnaA01g28170D protein. (588 aa)
	BnaA04g12320D	BnaA04g12320D protein. (163 aa)
	BnaA04g12330D	Acetyl-coenzyme A synthetase. (746 aa)
	BnaA08g07100D	BnaA08g07100D protein. (1124 aa)
	BnaA05g15310D	BnaA05g15310D protein. (551 aa)
	BnaC02g42520D	BnaC02g42520D protein. (459 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g28170D	BnaA04g12320D	A0A078G0V4	A0A078FSI9	BnaA01g28170D protein.	BnaA04g12320D protein.	0.498
BnaA01g28170D	BnaA04g12330D	A0A078G0V4	A0A078FU33	BnaA01g28170D protein.	Acetyl-coenzyme A synthetase.	0.465
BnaA01g28170D	BnaA08g07100D	A0A078G0V4	A0A078HT76	BnaA01g28170D protein.	BnaA08g07100D protein.	0.751
BnaA01g28170D	BnaC01g24110D	A0A078G0V4	A0A078GB79	BnaA01g28170D protein.	BnaC01g24110D protein.	0.465
BnaA01g28170D	BnaC05g37220D	A0A078G0V4	A0A078GUH1	BnaA01g28170D protein.	BnaC05g37220D protein.	0.900
BnaA01g28170D	BnaCnng48170D	A0A078G0V4	A0A078JIS2	BnaA01g28170D protein.	BnaCnng48170D protein.	0.751
BnaA02g12290D	BnaA04g12320D	A0A078FPL8	A0A078FSI9	BnaA02g12290D protein.	BnaA04g12320D protein.	0.499
BnaA02g12290D	BnaA04g12330D	A0A078FPL8	A0A078FU33	BnaA02g12290D protein.	Acetyl-coenzyme A synthetase.	0.465
BnaA02g12290D	BnaA08g07100D	A0A078FPL8	A0A078HT76	BnaA02g12290D protein.	BnaA08g07100D protein.	0.751
BnaA02g12290D	BnaC01g24110D	A0A078FPL8	A0A078GB79	BnaA02g12290D protein.	BnaC01g24110D protein.	0.543
BnaA02g12290D	BnaCnng48170D	A0A078FPL8	A0A078JIS2	BnaA02g12290D protein.	BnaCnng48170D protein.	0.751
BnaA02g17630D	BnaA04g12320D	A0A078HNX0	A0A078FSI9	BnaA02g17630D protein.	BnaA04g12320D protein.	0.465
BnaA02g17630D	BnaA04g12330D	A0A078HNX0	A0A078FU33	BnaA02g17630D protein.	Acetyl-coenzyme A synthetase.	0.465
BnaA02g17630D	BnaA08g07100D	A0A078HNX0	A0A078HT76	BnaA02g17630D protein.	BnaA08g07100D protein.	0.751
BnaA02g17630D	BnaC01g24110D	A0A078HNX0	A0A078GB79	BnaA02g17630D protein.	BnaC01g24110D protein.	0.465
BnaA02g17630D	BnaCnng48170D	A0A078HNX0	A0A078JIS2	BnaA02g17630D protein.	BnaCnng48170D protein.	0.751
BnaA02g18500D	BnaA04g12320D	A0A078HKF6	A0A078FSI9	BnaA02g18500D protein.	BnaA04g12320D protein.	0.465
BnaA02g18500D	BnaA04g12330D	A0A078HKF6	A0A078FU33	BnaA02g18500D protein.	Acetyl-coenzyme A synthetase.	0.465
BnaA02g18500D	BnaA08g07100D	A0A078HKF6	A0A078HT76	BnaA02g18500D protein.	BnaA08g07100D protein.	0.751
BnaA02g18500D	BnaC01g24110D	A0A078HKF6	A0A078GB79	BnaA02g18500D protein.	BnaC01g24110D protein.	0.465