(24 nodes) ARID DNA-binding domain superfamily network (Brassica napus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA05g13650D	BnaA05g13650D protein. (197 aa)
	BnaC08g44000D	BnaC08g44000D protein. (426 aa)
	BnaA06g20090D	BnaA06g20090D protein. (741 aa)
	BnaC09g23980D	BnaC09g23980D protein. (563 aa)
	BnaA08g28100D	BnaA08g28100D protein. (412 aa)
	BnaC05g02890D	BnaC05g02890D protein. (416 aa)
	BnaC04g04710D	BnaC04g04710D protein. (524 aa)
	BnaC05g40000D	BnaC05g40000D protein. (311 aa)
	BnaC06g11030D	BnaC06g11030D protein. (147 aa)
	BnaC09g09310D	BnaC09g09310D protein. (784 aa)
	BnaC04g50690D	BnaC04g50690D protein. (503 aa)
	BnaA06g14770D	BnaA06g14770D protein. (427 aa)
	BnaC05g16210D	BnaC05g16210D protein. (405 aa)
	BnaC07g15070D	BnaC07g15070D protein. (389 aa)
	BnaC08g19590D	BnaC08g19590D protein. (390 aa)
	BnaA09g10980D	BnaA09g10980D protein. (1463 aa)
	BnaA04g26630D	BnaA04g26630D protein. (513 aa)
	BnaA05g25940D	BnaA05g25940D protein. (313 aa)
	BnaA06g00220D	BnaA06g00220D protein. (324 aa)
	BnaC07g06470D	BnaC07g06470D protein. (1098 aa)
	BnaC06g07470D	BnaC06g07470D protein. (321 aa)
	BnaCnng59290D	BnaCnng59290D protein. (1005 aa)
	BnaCnng55190D	BnaCnng55190D protein. (1561 aa)
	BnaA09g52810D	BnaA09g52810D protein. (316 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA05g13650D	BnaA05g25940D	A0A078F5B9	A0A078I344	BnaA05g13650D protein.	BnaA05g25940D protein.	0.693
BnaA05g13650D	BnaA06g00220D	A0A078F5B9	A0A078IJ97	BnaA05g13650D protein.	BnaA06g00220D protein.	0.700
BnaA05g13650D	BnaA08g28100D	A0A078F5B9	A0A078FQY9	BnaA05g13650D protein.	BnaA08g28100D protein.	0.693
BnaA05g13650D	BnaC05g02890D	A0A078F5B9	A0A078FYZ5	BnaA05g13650D protein.	BnaC05g02890D protein.	0.693
BnaA05g13650D	BnaC05g40000D	A0A078F5B9	A0A078GE64	BnaA05g13650D protein.	BnaC05g40000D protein.	0.693
BnaA05g13650D	BnaC06g07470D	A0A078F5B9	A0A078IM64	BnaA05g13650D protein.	BnaC06g07470D protein.	0.700
BnaA05g13650D	BnaC06g11030D	A0A078F5B9	A0A078GNA3	BnaA05g13650D protein.	BnaC06g11030D protein.	0.693
BnaA05g13650D	BnaC08g44000D	A0A078F5B9	A0A078F9N3	BnaA05g13650D protein.	BnaC08g44000D protein.	0.693
BnaA05g25940D	BnaA05g13650D	A0A078I344	A0A078F5B9	BnaA05g25940D protein.	BnaA05g13650D protein.	0.693
BnaA05g25940D	BnaA06g00220D	A0A078I344	A0A078IJ97	BnaA05g25940D protein.	BnaA06g00220D protein.	0.709
BnaA05g25940D	BnaA08g28100D	A0A078I344	A0A078FQY9	BnaA05g25940D protein.	BnaA08g28100D protein.	0.705
BnaA05g25940D	BnaA09g52810D	A0A078I344	A0A078JNY0	BnaA05g25940D protein.	BnaA09g52810D protein.	0.418
BnaA05g25940D	BnaC05g02890D	A0A078I344	A0A078FYZ5	BnaA05g25940D protein.	BnaC05g02890D protein.	0.707
BnaA05g25940D	BnaC05g40000D	A0A078I344	A0A078GE64	BnaA05g25940D protein.	BnaC05g40000D protein.	0.695
BnaA05g25940D	BnaC06g07470D	A0A078I344	A0A078IM64	BnaA05g25940D protein.	BnaC06g07470D protein.	0.708
BnaA05g25940D	BnaC06g11030D	A0A078I344	A0A078GNA3	BnaA05g25940D protein.	BnaC06g11030D protein.	0.693
BnaA05g25940D	BnaC08g44000D	A0A078I344	A0A078F9N3	BnaA05g25940D protein.	BnaC08g44000D protein.	0.707
BnaA05g25940D	BnaC09g09310D	A0A078I344	A0A078GNH9	BnaA05g25940D protein.	BnaC09g09310D protein.	0.427
BnaA06g00220D	BnaA05g13650D	A0A078IJ97	A0A078F5B9	BnaA06g00220D protein.	BnaA05g13650D protein.	0.700
BnaA06g00220D	BnaA05g25940D	A0A078IJ97	A0A078I344	BnaA06g00220D protein.	BnaA05g25940D protein.	0.709