(58 nodes) Transcription factor bHLH95-like, basic helix-loop-helix domain network (Brassica napus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA06g24010D	BnaA06g24010D protein. (347 aa)
	BnaC05g03920D	BnaC05g03920D protein. (352 aa)
	BnaC05g03860D	BnaC05g03860D protein. (148 aa)
	BnaC03g58040D	BnaC03g58040D protein. (462 aa)
	BnaA09g13660D	BnaA09g13660D protein. (382 aa)
	BnaA08g28390D	BnaA08g28390D protein. (900 aa)
	BnaA08g13500D	BnaA08g13500D protein. (387 aa)
	BnaA09g43850D	BnaA09g43850D protein. (366 aa)
	BnaC03g49220D	BnaC03g49220D protein. (373 aa)
	BnaC04g02750D	BnaC04g02750D protein. (311 aa)
	BnaC04g36660D	BnaC04g36660D protein. (203 aa)
	BnaA05g20270D	BnaA05g20270D protein. (461 aa)
	BnaA06g36620D	BnaA06g36620D protein. (238 aa)
	BnaA02g08430D	BnaA02g08430D protein. (530 aa)
	BnaA06g02490D	BnaA06g02490D protein. (361 aa)
	BnaC01g29610D	BnaC01g29610D protein. (374 aa)
	BnaA08g08080D	BnaA08g08080D protein. (343 aa)
	BnaC06g04380D	BnaC06g04380D protein. (364 aa)
	BnaA05g18250D	BnaA05g18250D protein. (243 aa)
	BnaA05g16020D	BnaA05g16020D protein. (313 aa)
	BnaC05g32220D	BnaC05g32220D protein. (461 aa)
	BnaA04g24850D	BnaA04g24850D protein. (307 aa)
	BnaC03g41710D	BnaC03g41710D protein. (428 aa)
	BnaA09g16560D	BnaA09g16560D protein. (246 aa)
	BnaC02g11970D	BnaC02g11970D protein. (530 aa)
	BnaC04g12910D	BnaC04g12910D protein. (146 aa)
	BnaC05g30500D	BnaC05g30500D protein. (289 aa)
	BnaC09g21880D	BnaC09g21880D protein. (286 aa)
	BnaA08g06290D	BnaA08g06290D protein. (244 aa)
	BnaC03g24060D	BnaC03g24060D protein. (203 aa)
	BnaA05g11200D	BnaA05g11200D protein. (129 aa)
	BnaCnng10760D	BnaCnng10760D protein. (437 aa)
	BnaA04g20390D	BnaA04g20390D protein. (290 aa)
	BnaCnng10960D	BnaCnng10960D protein. (432 aa)
	BnaA05g20570D	BnaA05g20570D protein. (268 aa)
	BnaA09g19880D	BnaA09g19880D protein. (286 aa)
	BnaA01g07690D	BnaA01g07690D protein. (373 aa)
	BnaA01g22830D	BnaA01g22830D protein. (378 aa)
	BnaA01g26110D	BnaA01g26110D protein. (264 aa)
	BnaA06g03090D	BnaA06g03090D protein. (300 aa)
	BnaCnng19670D	BnaCnng19670D protein. (245 aa)
	BnaA10g03540D	BnaA10g03540D protein. (360 aa)
	BnaA10g03490D	BnaA10g03490D protein. (154 aa)
	BnaCnng22590D	BnaCnng22590D protein. (283 aa)
	BnaC08g47530D	BnaC08g47530D protein. (155 aa)
	BnaCnng26150D	BnaCnng26150D protein. (300 aa)
	BnaA01g36370D	BnaA01g36370D protein. (435 aa)
	BnaA05g36200D	BnaA05g36200D protein. (273 aa)
	BnaC01g41100D	BnaC01g41100D protein. (292 aa)
	BnaCnng37600D	BnaCnng37600D protein. (251 aa)
	BnaCnng38940D	BnaCnng38940D protein. (365 aa)
	BnaC09g53530D	BnaC09g53530D protein. (530 aa)
	BnaCnng53100D	BnaCnng53100D protein. (227 aa)
	BnaAnng24280D	BnaAnng24280D protein. (292 aa)
	BnaAnng25330D	BnaAnng25330D protein. (148 aa)
	BnaAnng24240D	BnaAnng24240D protein. (254 aa)
	BnaCnng62790D	BnaCnng62790D protein. (242 aa)
	BnaCnng66260D	BnaCnng66260D protein. (313 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g07690D	BnaA06g02490D	A0A078IF14	A0A078GDV3	BnaA01g07690D protein.	BnaA06g02490D protein.	0.553
BnaA01g07690D	BnaC06g04380D	A0A078IF14	A0A078GKU6	BnaA01g07690D protein.	BnaC06g04380D protein.	0.559
BnaA01g22830D	BnaA04g20390D	A0A078IGF6	A0A078I0N0	BnaA01g22830D protein.	BnaA04g20390D protein.	0.418
BnaA01g22830D	BnaA06g02490D	A0A078IGF6	A0A078GDV3	BnaA01g22830D protein.	BnaA06g02490D protein.	0.632
BnaA01g22830D	BnaA06g24010D	A0A078IGF6	A0A078FAH1	BnaA01g22830D protein.	BnaA06g24010D protein.	0.410
BnaA01g22830D	BnaAnng24240D	A0A078IGF6	A0A078JNX8	BnaA01g22830D protein.	BnaAnng24240D protein.	0.414
BnaA01g22830D	BnaC03g49220D	A0A078IGF6	A0A078FNV5	BnaA01g22830D protein.	BnaC03g49220D protein.	0.420
BnaA01g22830D	BnaC06g04380D	A0A078IGF6	A0A078GKU6	BnaA01g22830D protein.	BnaC06g04380D protein.	0.636
BnaA01g22830D	BnaCnng53100D	A0A078IGF6	A0A078JHA8	BnaA01g22830D protein.	BnaCnng53100D protein.	0.455
BnaA01g26110D	BnaA04g20390D	A0A078IJH5	A0A078I0N0	BnaA01g26110D protein.	BnaA04g20390D protein.	0.419
BnaA01g26110D	BnaAnng24240D	A0A078IJH5	A0A078JNX8	BnaA01g26110D protein.	BnaAnng24240D protein.	0.441
BnaA02g08430D	BnaA09g43850D	A0A078G7U1	A0A078FNF3	BnaA02g08430D protein.	BnaA09g43850D protein.	0.471
BnaA04g20390D	BnaA01g22830D	A0A078I0N0	A0A078IGF6	BnaA04g20390D protein.	BnaA01g22830D protein.	0.418
BnaA04g20390D	BnaA01g26110D	A0A078I0N0	A0A078IJH5	BnaA04g20390D protein.	BnaA01g26110D protein.	0.419
BnaA04g20390D	BnaA05g20570D	A0A078I0N0	A0A078I5R4	BnaA04g20390D protein.	BnaA05g20570D protein.	0.400
BnaA04g20390D	BnaA06g24010D	A0A078I0N0	A0A078FAH1	BnaA04g20390D protein.	BnaA06g24010D protein.	0.415
BnaA04g20390D	BnaA09g13660D	A0A078I0N0	A0A078FL46	BnaA04g20390D protein.	BnaA09g13660D protein.	0.454
BnaA04g20390D	BnaA09g19880D	A0A078I0N0	A0A078IAP9	BnaA04g20390D protein.	BnaA09g19880D protein.	0.441
BnaA04g20390D	BnaAnng24280D	A0A078I0N0	A0A078JLY9	BnaA04g20390D protein.	BnaAnng24280D protein.	0.459
BnaA04g20390D	BnaC01g29610D	A0A078I0N0	A0A078GJC6	BnaA04g20390D protein.	BnaC01g29610D protein.	0.424