31 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC03g48960D	BnaC03g48960D protein. (1080 aa)
	BnaA02g11720D	BnaA02g11720D protein. (251 aa)
	BnaC04g36720D	BnaC04g36720D protein. (521 aa)
	BnaA06g02620D	BnaA06g02620D protein. (419 aa)
	BnaC03g23320D	BnaC03g23320D protein. (298 aa)
	BnaA09g41570D	BnaA09g41570D protein. (515 aa)
	BnaA07g09990D	BnaA07g09990D protein. (156 aa)
	BnaA08g07490D	BnaA08g07490D protein. (172 aa)
	BnaA06g13040D	BnaA06g13040D protein. (227 aa)
	BnaC01g35310D	BnaC01g35310D protein. (253 aa)
	BnaA01g06220D	BnaA01g06220D protein. (583 aa)
	BnaA05g15700D	BnaA05g15700D protein. (406 aa)
	BnaA05g08380D	BnaA05g08380D protein. (1995 aa)
	BnaA01g13980D	BnaA01g13980D protein. (330 aa)
	BnaA01g18590D	BnaA01g18590D protein. (407 aa)
	BnaA03g19440D	BnaA03g19440D protein. (298 aa)
	BnaC06g03920D	BnaC06g03920D protein. (419 aa)
	BnaA04g14130D	BnaA04g14130D protein. (522 aa)
	BnaC06g05520D	BnaC06g05520D protein. (284 aa)
	BnaA08g20480D	BnaA08g20480D protein. (87 aa)
	BnaA01g23140D	BnaA01g23140D protein. (131 aa)
	BnaCnng30170D	BnaCnng30170D protein. (304 aa)
	BnaCnng36370D	Oleosin. (230 aa)
	BnaCnng65810D	BnaCnng65810D protein. (451 aa)
	BnaA10g30180D	Oleosin. (204 aa)
	BnaC03g72450D	BnaC03g72450D protein. (157 aa)
	BnaA05g27690D	BnaA05g27690D protein. (768 aa)
	BnaA06g24310D	BnaA06g24310D protein. (1076 aa)
	BnaA09g39760D	BnaA04g27270D protein. (157 aa)
	BnaC02g01380D	BnaC02g01380D protein. (136 aa)
	BnaC04g47610D	BnaC04g47610D protein. (108 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g13980D	BnaA02g11720D	A0A078H6U6	A0A078FVC8	BnaA01g13980D protein.	BnaA02g11720D protein.	0.736
BnaA01g23140D	BnaA02g11720D	A0A078I7X7	A0A078FVC8	BnaA01g23140D protein.	BnaA02g11720D protein.	0.736
BnaA02g11720D	BnaA01g13980D	A0A078FVC8	A0A078H6U6	BnaA02g11720D protein.	BnaA01g13980D protein.	0.736
BnaA02g11720D	BnaA01g23140D	A0A078FVC8	A0A078I7X7	BnaA02g11720D protein.	BnaA01g23140D protein.	0.736
BnaA02g11720D	BnaA05g08380D	A0A078FVC8	A0A078H2R8	BnaA02g11720D protein.	BnaA05g08380D protein.	0.736
BnaA02g11720D	BnaA06g13040D	A0A078FVC8	A0A078GPY8	BnaA02g11720D protein.	BnaA06g13040D protein.	0.736
BnaA02g11720D	BnaA06g24310D	A0A078FVC8	A0A078FAF3	BnaA02g11720D protein.	BnaA06g24310D protein.	0.736
BnaA02g11720D	BnaA07g09990D	A0A078FVC8	A0A078GMF0	BnaA02g11720D protein.	BnaA07g09990D protein.	0.545
BnaA02g11720D	BnaA08g07490D	A0A078FVC8	A0A078GP76	BnaA02g11720D protein.	BnaA08g07490D protein.	0.736
BnaA02g11720D	BnaA08g20480D	A0A078FVC8	A0A078HUN2	BnaA02g11720D protein.	BnaA08g20480D protein.	0.545
BnaA02g11720D	BnaA09g39760D	A0A078FVC8	A0A078FAH6	BnaA02g11720D protein.	BnaA04g27270D protein.	0.545
BnaA02g11720D	BnaC03g48960D	A0A078FVC8	A0A078FQH5	BnaA02g11720D protein.	BnaC03g48960D protein.	0.736
BnaA02g11720D	BnaC03g72450D	A0A078FVC8	A0A078D4W1	BnaA02g11720D protein.	BnaC03g72450D protein.	0.545
BnaA02g11720D	BnaCnng30170D	A0A078FVC8	A0A078J066	BnaA02g11720D protein.	BnaCnng30170D protein.	0.545
BnaA02g11720D	BnaCnng65810D	A0A078FVC8	A0A078JTW7	BnaA02g11720D protein.	BnaCnng65810D protein.	0.736
BnaA03g19440D	BnaA05g15700D	A0A078HCC7	A0A078GT17	BnaA03g19440D protein.	BnaA05g15700D protein.	0.792
BnaA03g19440D	BnaA05g27690D	A0A078HCC7	A0A078F9U0	BnaA03g19440D protein.	BnaA05g27690D protein.	0.813
BnaA03g19440D	BnaA06g02620D	A0A078HCC7	A0A078G8P2	BnaA03g19440D protein.	BnaA06g02620D protein.	0.827
BnaA03g19440D	BnaC06g03920D	A0A078HCC7	A0A078HGW7	BnaA03g19440D protein.	BnaC06g03920D protein.	0.792
BnaA05g08380D	BnaA02g11720D	A0A078H2R8	A0A078FVC8	BnaA05g08380D protein.	BnaA02g11720D protein.	0.736