41 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC03g72450D	BnaC03g72450D protein. (157 aa)
	BnaC03g63160D	Serine/threonine-protein phosphatase. (153 aa)
	BnaA09g39760D	BnaA04g27270D protein. (157 aa)
	BnaC06g31070D	Serine/threonine-protein phosphatase. (306 aa)
	BnaC04g48370D	Serine/threonine-protein phosphatase. (313 aa)
	BnaA06g33370D	BnaA06g33370D protein. (595 aa)
	BnaA08g14200D	BnaA08g14200D protein. (285 aa)
	BnaA08g14190D	BnaA08g14190D protein. (295 aa)
	BnaA04g05560D	BnaA04g05560D protein. (376 aa)
	BnaC01g37790D	BnaC01g37790D protein. (886 aa)
	BnaCnng04640D	BnaCnng04640D protein. (413 aa)
	BnaCnng04650D	BnaCnng04650D protein. (81 aa)
	BnaC09g36480D	BnaC09g36480D protein. (136 aa)
	BnaA07g09990D	BnaA07g09990D protein. (156 aa)
	BnaC09g41610D	BnaC09g41610D protein. (398 aa)
	BnaC01g19180D	BnaC01g19180D protein. (300 aa)
	BnaC09g14970D	Serine/threonine-protein phosphatase. (306 aa)
	BnaA03g54310D	BnaA03g54310D protein. (159 aa)
	BnaA09g48180D	Serine/threonine-protein phosphatase. (306 aa)
	BnaC09g37810D	BnaC09g37810D protein. (135 aa)
	BnaA08g19440D	BnaA08g19440D protein. (588 aa)
	BnaC05g07970D	Serine/threonine-protein phosphatase. (306 aa)
	BnaC09g21590D	BnaC09g21590D protein. (463 aa)
	BnaC02g06440D	BnaC02g06440D protein. (1140 aa)
	BnaA07g28500D	Serine/threonine-protein phosphatase. (306 aa)
	BnaA08g20480D	BnaA08g20480D protein. (87 aa)
	BnaA09g28590D	BnaA09g28590D protein. (589 aa)
	BnaAnng33670D	BnaAnng33670D protein. (155 aa)
	BnaCnng63970D	Serine/threonine-protein phosphatase. (313 aa)
	BnaAnng30450D	BnaAnng30450D protein. (531 aa)
	BnaCnng57350D	BnaCnng57350D protein. (294 aa)
	BnaC03g72670D	Serine/threonine-protein phosphatase. (313 aa)
	BnaCnng30170D	BnaCnng30170D protein. (304 aa)
	BnaA05g34330D	Serine/threonine-protein phosphatase. (313 aa)
	BnaCnng22530D	Serine/threonine-protein phosphatase. (306 aa)
	BnaA07g37150D	BnaA07g37150D protein. (586 aa)
	BnaCnng16920D	BnaCnng16920D protein. (165 aa)
	BnaA04g24540D	Serine/threonine-protein phosphatase. (313 aa)
	BnaA03g48380D	BnaA03g48380D protein. (291 aa)
	BnaA09g14410D	Serine/threonine-protein phosphatase. (306 aa)
	BnaA01g29900D	BnaA01g29900D protein. (901 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g29900D	BnaA04g24540D	A0A078I174	A0A078IDJ1	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA01g29900D	BnaA05g34330D	A0A078I174	A0A078IYJ1	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA01g29900D	BnaA07g28500D	A0A078I174	A0A078HPP5	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA01g29900D	BnaA09g14410D	A0A078I174	A0A078I5H4	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA01g29900D	BnaA09g48180D	A0A078I174	A0A078HAU4	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA01g29900D	BnaC03g63160D	A0A078I174	A0A078F7B6	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA01g29900D	BnaC03g72670D	A0A078I174	A0A078JMD1	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA01g29900D	BnaC04g48370D	A0A078I174	A0A078FK70	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA01g29900D	BnaC05g07970D	A0A078I174	A0A078HJD3	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA01g29900D	BnaC06g31070D	A0A078I174	A0A078FF71	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA01g29900D	BnaC09g14970D	A0A078I174	A0A078H0F3	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA01g29900D	BnaC09g36480D	A0A078I174	A0A078GK51	BnaA01g29900D protein.	BnaC09g36480D protein.	0.728
BnaA01g29900D	BnaCnng22530D	A0A078I174	A0A078IRE4	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA01g29900D	BnaCnng63970D	A0A078I174	A0A078JVA5	BnaA01g29900D protein.	Serine/threonine-protein phosphatase.	0.728
BnaA03g48380D	BnaA07g09990D	A0A078I6Z9	A0A078GMF0	BnaA03g48380D protein.	BnaA07g09990D protein.	0.829
BnaA03g48380D	BnaA08g20480D	A0A078I6Z9	A0A078HUN2	BnaA03g48380D protein.	BnaA08g20480D protein.	0.829
BnaA03g48380D	BnaA09g39760D	A0A078I6Z9	A0A078FAH6	BnaA03g48380D protein.	BnaA04g27270D protein.	0.829
BnaA03g48380D	BnaC03g72450D	A0A078I6Z9	A0A078D4W1	BnaA03g48380D protein.	BnaC03g72450D protein.	0.829
BnaA03g48380D	BnaCnng30170D	A0A078I6Z9	A0A078J066	BnaA03g48380D protein.	BnaCnng30170D protein.	0.829
BnaA03g54310D	BnaA04g24540D	A0A078H1G6	A0A078IDJ1	BnaA03g54310D protein.	Serine/threonine-protein phosphatase.	0.728