128 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC03g72450D	BnaC03g72450D protein. (157 aa)
	BnaC09g53780D	BnaC09g53780D protein. (225 aa)
	BnaA07g24990D	BnaA07g24990D protein. (856 aa)
	BnaA03g17510D	BnaA03g17510D protein. (207 aa)
	BnaC03g35840D	BnaC03g35840D protein. (450 aa)
	BnaC03g34660D	BnaC03g34660D protein. (437 aa)
	BnaA05g27630D	BnaA05g27630D protein. (334 aa)
	BnaC05g26500D	BnaC05g26500D protein. (250 aa)
	BnaC08g12040D	BnaC08g12040D protein. (191 aa)
	BnaA02g06200D	BnaA02g06200D protein. (479 aa)
	BnaA09g39760D	BnaA04g27270D protein. (157 aa)
	BnaCnng02850D	BnaCnng02850D protein. (147 aa)
	BnaCnng03030D	BnaCnng03030D protein. (370 aa)
	BnaC05g03860D	BnaC05g03860D protein. (148 aa)
	BnaCnng02840D	BnaCnng02840D protein. (290 aa)
	BnaC06g13970D	BnaC06g13970D protein. (91 aa)
	BnaA03g00490D	BnaA03g00490D protein. (207 aa)
	BnaC02g02170D	BnaC02g02170D protein. (137 aa)
	BnaA09g17460D	BnaA09g17460D protein. (113 aa)
	BnaC04g26490D	BnaC04g26490D protein. (180 aa)
	BnaC04g26610D	BnaC04g26610D protein. (116 aa)
	BnaA09g42830D	BnaA09g42830D protein. (323 aa)
	BnaA02g22280D	BnaA02g22280D protein. (199 aa)
	BnaC09g40270D	BnaC09g40270D protein. (151 aa)
	BnaA08g27180D	BnaA08g27180D protein. (221 aa)
	BnaA04g12620D	BnaA04g12620D protein. (323 aa)
	BnaC05g01320D	BnaC05g01320D protein. (215 aa)
	BnaA07g08990D	BnaA07g08990D protein. (789 aa)
	BnaA09g05810D	BnaA09g05810D protein. (533 aa)
	BnaA06g35030D	BnaA06g35030D protein. (267 aa)
	BnaC05g08440D	BnaC05g08440D protein. (171 aa)
	BnaA01g23630D	BnaA01g23630D protein; Belongs to the glycosyl hydrolase 31 family. (1068 aa)
	BnaAnng03170D	BnaAnng03170D protein. (433 aa)
	BnaC08g14680D	BnaC08g14680D protein. (328 aa)
	BnaA08g25490D	BnaA08g25490D protein. (320 aa)
	BnaC03g27380D	BnaC03g27380D protein. (66 aa)
	BnaC09g47280D	BnaC09g47280D protein. (361 aa)
	BnaA09g00550D	BnaA09g00550D protein. (216 aa)
	BnaA06g20610D	BnaA06g20610D protein. (284 aa)
	BnaC08g43170D	Calreticulin. (434 aa)
	BnaA05g30710D	BnaA05g30710D protein. (135 aa)
	BnaA05g31010D	BnaA05g31010D protein. (442 aa)
	BnaA09g26510D	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (617 aa)
	BnaA05g30720D	BnaA05g30720D protein. (943 aa)
	BnaC06g12260D	BnaC06g12260D protein. (243 aa)
	BnaA09g27870D	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (571 aa)
	BnaA07g09990D	BnaA07g09990D protein. (156 aa)
	BnaC06g26720D	BnaC06g26720D protein. (857 aa)
	BnaA05g15850D	BnaA05g15850D protein. (246 aa)
	BnaA02g33900D	BnaA02g33900D protein. (314 aa)
	BnaA08g26940D	Calreticulin. (452 aa)
	BnaA08g26530D	Calreticulin. (422 aa)
	BnaCnng06700D	Calreticulin. (422 aa)
	BnaA10g13380D	BnaA10g13380D protein. (498 aa)
	BnaA10g12080D	BnaA10g12080D protein. (221 aa)
	BnaA09g45630D	BnaA09g45630D protein. (264 aa)
	BnaC08g42230D	BnaC08g42230D protein. (312 aa)
	BnaA09g47900D	BnaA09g47900D protein. (312 aa)
	BnaC03g59570D	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (610 aa)
	BnaC04g12910D	BnaC04g12910D protein. (146 aa)
	BnaA01g31280D	BnaA01g31280D protein. (817 aa)
	BnaA01g31230D	BnaA01g31230D protein. (101 aa)
	BnaA01g31250D	BnaA01g31250D protein. (395 aa)
	BnaA01g31200D	BnaA01g31200D protein. (282 aa)
	BnaA10g17080D	BnaA10g17080D protein. (150 aa)
	BnaC02g33870D	BnaC02g33870D protein. (262 aa)
	BnaC05g10490D	BnaC05g10490D protein. (252 aa)
	BnaC02g42710D	BnaC02g42710D protein. (314 aa)
	BnaC05g11030D	BnaC05g11030D protein. (114 aa)
	BnaA02g27020D	BnaA02g27020D protein. (262 aa)
	BnaA08g20480D	BnaA08g20480D protein. (87 aa)
	BnaA06g22890D	BnaA06g22890D protein. (341 aa)
	BnaA09g15400D	Calreticulin. (423 aa)
	BnaC05g43260D	BnaC05g43260D protein. (455 aa)
	BnaA05g11200D	BnaA05g11200D protein. (129 aa)
	BnaA09g15970D	BnaA09g15970D protein. (594 aa)
	BnaC05g43250D	BnaC05g43250D protein. (483 aa)
	BnaA06g22960D	BnaA06g22960D protein; Belongs to the glycosyl hydrolase 31 family. (645 aa)
	BnaAnng07040D	BnaAnng07040D protein. (69 aa)
	BnaAnng07030D	BnaAnng07030D protein. (535 aa)
	BnaA06g22950D	BnaA06g22950D protein. (216 aa)
	BnaC02g03310D	BnaC02g03310D protein. (417 aa)
	BnaA05g28790D	BnaA05g28790D protein. (364 aa)
	BnaA05g28780D	BnaA05g28780D protein. (469 aa)
	BnaA06g33920D	BnaA06g33920D protein. (293 aa)
	BnaCnng13720D	BnaCnng13720D protein. (323 aa)
	BnaA07g14150D	BnaA07g14150D protein. (239 aa)
	BnaAnng08520D	BnaAnng08520D protein. (391 aa)
	BnaCnng15100D	BnaCnng15100D protein. (286 aa)
	BnaA07g14130D	BnaA07g14130D protein. (239 aa)
	BnaA06g33500D	BnaA06g33500D protein. (105 aa)
	BnaA06g09040D	BnaA06g09040D protein. (255 aa)
	BnaCnng17060D	BnaCnng17060D protein. (91 aa)
	BnaA03g50870D	BnaA03g50870D protein. (793 aa)
	BnaA10g03490D	BnaA10g03490D protein. (154 aa)
	BnaC03g77180D	BnaC03g77180D protein. (860 aa)
	BnaA08g11620D	BnaA08g11620D protein. (838 aa)
	BnaC04g54100D	BnaC04g54100D protein. (234 aa)
	BnaCnng32140D	BnaCnng32140D protein. (114 aa)
	BnaCnng30170D	BnaCnng30170D protein. (304 aa)
	BnaA09g03410D	BnaA09g03410D protein. (66 aa)
	BnaCnng29880D	BnaCnng29880D protein; Belongs to the glycosyl hydrolase 31 family. (556 aa)
	BnaA09g52340D	BnaA09g52340D protein. (334 aa)
	BnaC01g43040D	BnaC01g43040D protein. (604 aa)
	BnaA09g52350D	BnaA09g52350D protein. (171 aa)
	BnaA09g52360D	BnaA09g52360D protein; Belongs to the glycosyl hydrolase 31 family. (641 aa)
	BnaCnng38000D	BnaCnng38000D protein. (234 aa)
	BnaCnng35950D	BnaCnng35950D protein. (1114 aa)
	BnaA06g38610D	BnaA06g38610D protein. (286 aa)
	BnaC03g77230D	BnaC03g77230D protein. (846 aa)
	BnaAnng18450D	BnaAnng18450D protein. (419 aa)
	BnaCnng45990D	BnaCnng45990D protein. (302 aa)
	BnaAnng23500D	BnaAnng23500D protein. (707 aa)
	BnaAnng24310D	BnaAnng24310D protein. (177 aa)
	BnaCnng58540D	BnaCnng58540D protein. (205 aa)
	BnaAnng25330D	BnaAnng25330D protein. (148 aa)
	BnaAnng24500D	BnaAnng24500D protein. (290 aa)
	BnaAnng25530D	BnaAnng25530D protein. (552 aa)
	BnaCnng54250D	BnaCnng54250D protein. (116 aa)
	BnaCnng61870D	BnaCnng61870D protein. (206 aa)
	BnaAnng25010D	BnaAnng25010D protein. (237 aa)
	BnaC09g53890D	BnaC09g53890D protein. (511 aa)
	BnaCnng61090D	BnaCnng61090D protein. (193 aa)
	BnaAnng27500D	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (354 aa)
	BnaAnng33150D	BnaAnng33150D protein. (704 aa)
	BnaCnng65820D	BnaCnng65820D protein. (186 aa)
	BnaCnng72110D	BnaCnng72110D protein; Belongs to the glycosyl hydrolase 31 family. (286 aa)
	BnaAnng40540D	BnaAnng40540D protein. (456 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g23630D	BnaA07g08990D	A0A078FZA7	A0A078FTR1	BnaA01g23630D protein; Belongs to the glycosyl hydrolase 31 family.	BnaA07g08990D protein.	0.463
BnaA01g23630D	BnaA07g24990D	A0A078FZA7	A0A078EZB0	BnaA01g23630D protein; Belongs to the glycosyl hydrolase 31 family.	BnaA07g24990D protein.	0.463
BnaA01g23630D	BnaA09g05810D	A0A078FZA7	A0A078FV04	BnaA01g23630D protein; Belongs to the glycosyl hydrolase 31 family.	BnaA09g05810D protein.	0.777
BnaA01g23630D	BnaA09g26510D	A0A078FZA7	A0A078GIJ8	BnaA01g23630D protein; Belongs to the glycosyl hydrolase 31 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.409
BnaA01g23630D	BnaAnng07030D	A0A078FZA7	A0A078I1B3	BnaA01g23630D protein; Belongs to the glycosyl hydrolase 31 family.	BnaAnng07030D protein.	0.777
BnaA01g23630D	BnaAnng07040D	A0A078FZA7	A0A078HZW9	BnaA01g23630D protein; Belongs to the glycosyl hydrolase 31 family.	BnaAnng07040D protein.	0.777
BnaA01g23630D	BnaAnng25530D	A0A078FZA7	A0A078JN54	BnaA01g23630D protein; Belongs to the glycosyl hydrolase 31 family.	BnaAnng25530D protein.	0.463
BnaA01g23630D	BnaAnng40540D	A0A078FZA7	A0A078K329	BnaA01g23630D protein; Belongs to the glycosyl hydrolase 31 family.	BnaAnng40540D protein.	0.777
BnaA01g23630D	BnaC03g59570D	A0A078FZA7	A0A078HBX2	BnaA01g23630D protein; Belongs to the glycosyl hydrolase 31 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.409
BnaA01g23630D	BnaC06g26720D	A0A078FZA7	A0A078GUS2	BnaA01g23630D protein; Belongs to the glycosyl hydrolase 31 family.	BnaC06g26720D protein.	0.463
BnaA01g23630D	BnaCnng17060D	A0A078FZA7	A0A078IGX0	BnaA01g23630D protein; Belongs to the glycosyl hydrolase 31 family.	BnaCnng17060D protein.	0.746
BnaA01g31200D	BnaA07g09990D	A0A078HHM6	A0A078GMF0	BnaA01g31200D protein.	BnaA07g09990D protein.	0.496
BnaA01g31200D	BnaA08g20480D	A0A078HHM6	A0A078HUN2	BnaA01g31200D protein.	BnaA08g20480D protein.	0.496
BnaA01g31200D	BnaA09g03410D	A0A078HHM6	A0A078J1C9	BnaA01g31200D protein.	BnaA09g03410D protein.	0.482
BnaA01g31200D	BnaA09g39760D	A0A078HHM6	A0A078FAH6	BnaA01g31200D protein.	BnaA04g27270D protein.	0.496
BnaA01g31200D	BnaC03g72450D	A0A078HHM6	A0A078D4W1	BnaA01g31200D protein.	BnaC03g72450D protein.	0.496
BnaA01g31200D	BnaCnng30170D	A0A078HHM6	A0A078J066	BnaA01g31200D protein.	BnaCnng30170D protein.	0.496
BnaA01g31230D	BnaA07g09990D	A0A078HD28	A0A078GMF0	BnaA01g31230D protein.	BnaA07g09990D protein.	0.496
BnaA01g31230D	BnaA08g20480D	A0A078HD28	A0A078HUN2	BnaA01g31230D protein.	BnaA08g20480D protein.	0.496
BnaA01g31230D	BnaA09g03410D	A0A078HD28	A0A078J1C9	BnaA01g31230D protein.	BnaA09g03410D protein.	0.482