29 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC03g72450D	BnaC03g72450D protein. (157 aa)
	BnaA05g17420D	BnaA05g17420D protein. (445 aa)
	BnaC09g12780D	BnaC09g12780D protein. (539 aa)
	BnaA09g39760D	BnaA04g27270D protein. (157 aa)
	BnaC05g00420D	BnaC05g00420D protein. (540 aa)
	BnaA08g03130D	BnaA08g03130D protein. (139 aa)
	BnaA01g26980D	BnaA01g26980D protein. (326 aa)
	BnaA09g44710D	BnaA09g44710D protein. (250 aa)
	BnaC05g34800D	BnaC05g34800D protein. (185 aa)
	BnaA06g12310D	BnaA06g12310D protein. (250 aa)
	BnaA07g09990D	BnaA07g09990D protein. (156 aa)
	BnaA04g24810D	BnaA04g24810D protein. (480 aa)
	BnaCnng08820D	BnaCnng08820D protein. (540 aa)
	BnaC05g30420D	BnaC05g30420D protein. (448 aa)
	BnaA08g20480D	BnaA08g20480D protein. (87 aa)
	BnaA01g13120D	BnaA01g13120D protein. (298 aa)
	BnaA09g12360D	BnaA09g12360D protein. (539 aa)
	BnaC01g35030D	BnaC01g35030D protein. (899 aa)
	BnaAnng11210D	BnaAnng11210D protein. (162 aa)
	BnaC04g52940D	BnaC04g52940D protein. (276 aa)
	BnaA05g34420D	BnaA05g34420D protein. (791 aa)
	BnaC04g52920D	BnaC04g52920D protein. (541 aa)
	BnaCnng30120D	BnaCnng30120D protein. (447 aa)
	BnaCnng30170D	BnaCnng30170D protein. (304 aa)
	BnaA05g36460D	BnaA05g36460D protein. (225 aa)
	BnaA08g31760D	BnaA08g31760D protein. (541 aa)
	BnaC05g50130D	BnaC05g50130D protein. (250 aa)
	BnaC06g40840D	BnaC06g40840D protein. (299 aa)
	BnaCnng75080D	BnaCnng75080D protein. (244 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g13120D	BnaA07g09990D	A0A078I3F7	A0A078GMF0	BnaA01g13120D protein.	BnaA07g09990D protein.	0.874
BnaA01g13120D	BnaA08g20480D	A0A078I3F7	A0A078HUN2	BnaA01g13120D protein.	BnaA08g20480D protein.	0.874
BnaA01g13120D	BnaA09g39760D	A0A078I3F7	A0A078FAH6	BnaA01g13120D protein.	BnaA04g27270D protein.	0.874
BnaA01g13120D	BnaC03g72450D	A0A078I3F7	A0A078D4W1	BnaA01g13120D protein.	BnaC03g72450D protein.	0.874
BnaA01g13120D	BnaCnng30170D	A0A078I3F7	A0A078J066	BnaA01g13120D protein.	BnaCnng30170D protein.	0.874
BnaA01g26980D	BnaA07g09990D	A0A078G0H0	A0A078GMF0	BnaA01g26980D protein.	BnaA07g09990D protein.	0.874
BnaA01g26980D	BnaA08g20480D	A0A078G0H0	A0A078HUN2	BnaA01g26980D protein.	BnaA08g20480D protein.	0.874
BnaA01g26980D	BnaA09g39760D	A0A078G0H0	A0A078FAH6	BnaA01g26980D protein.	BnaA04g27270D protein.	0.874
BnaA01g26980D	BnaC03g72450D	A0A078G0H0	A0A078D4W1	BnaA01g26980D protein.	BnaC03g72450D protein.	0.874
BnaA01g26980D	BnaCnng30170D	A0A078G0H0	A0A078J066	BnaA01g26980D protein.	BnaCnng30170D protein.	0.874
BnaA05g17420D	BnaA07g09990D	A0A078F845	A0A078GMF0	BnaA05g17420D protein.	BnaA07g09990D protein.	0.874
BnaA05g17420D	BnaA08g20480D	A0A078F845	A0A078HUN2	BnaA05g17420D protein.	BnaA08g20480D protein.	0.874
BnaA05g17420D	BnaA09g39760D	A0A078F845	A0A078FAH6	BnaA05g17420D protein.	BnaA04g27270D protein.	0.874
BnaA05g17420D	BnaC03g72450D	A0A078F845	A0A078D4W1	BnaA05g17420D protein.	BnaC03g72450D protein.	0.874
BnaA05g17420D	BnaCnng30170D	A0A078F845	A0A078J066	BnaA05g17420D protein.	BnaCnng30170D protein.	0.874
BnaA05g36460D	BnaA07g09990D	A0A078J7Z9	A0A078GMF0	BnaA05g36460D protein.	BnaA07g09990D protein.	0.874
BnaA05g36460D	BnaA08g20480D	A0A078J7Z9	A0A078HUN2	BnaA05g36460D protein.	BnaA08g20480D protein.	0.874
BnaA05g36460D	BnaA09g39760D	A0A078J7Z9	A0A078FAH6	BnaA05g36460D protein.	BnaA04g27270D protein.	0.874
BnaA05g36460D	BnaC03g72450D	A0A078J7Z9	A0A078D4W1	BnaA05g36460D protein.	BnaC03g72450D protein.	0.874
BnaA05g36460D	BnaCnng30170D	A0A078J7Z9	A0A078J066	BnaA05g36460D protein.	BnaCnng30170D protein.	0.874