20 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC03g72450D	BnaC03g72450D protein. (157 aa)
	BnaA09g05250D	BnaA09g05250D protein. (308 aa)
	BnaC07g33460D	BnaC07g33460D protein. (94 aa)
	BnaA09g39760D	BnaA04g27270D protein. (157 aa)
	BnaC07g33480D	BnaC07g33480D protein. (499 aa)
	BnaA03g52280D	BnaA03g52280D protein. (262 aa)
	BnaA08g03020D	BnaA08g03020D protein. (509 aa)
	BnaA07g09990D	BnaA07g09990D protein. (156 aa)
	BnaA01g17680D	BnaA01g17680D protein. (330 aa)
	BnaA01g17670D	BnaA01g17670D protein. (189 aa)
	BnaC01g22020D	BnaC01g22020D protein. (502 aa)
	BnaC05g08090D	BnaC05g08090D protein. (221 aa)
	BnaC02g41600D	BnaC02g41600D protein. (308 aa)
	BnaA08g20480D	BnaA08g20480D protein. (87 aa)
	BnaC06g02240D	BnaC06g02240D protein. (506 aa)
	BnaA02g32850D	BnaA02g32850D protein. (308 aa)
	BnaC06g43120D	BnaC06g43120D protein. (419 aa)
	BnaA07g38320D	BnaA07g38320D protein. (415 aa)
	BnaCnng30170D	BnaCnng30170D protein. (304 aa)
	BnaCnng34170D	BnaCnng34170D protein. (235 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g17670D	BnaA03g52280D	A0A078H3Y1	A0A078FGD1	BnaA01g17670D protein.	BnaA03g52280D protein.	0.804
BnaA01g17670D	BnaA07g09990D	A0A078H3Y1	A0A078GMF0	BnaA01g17670D protein.	BnaA07g09990D protein.	0.814
BnaA01g17670D	BnaA08g20480D	A0A078H3Y1	A0A078HUN2	BnaA01g17670D protein.	BnaA08g20480D protein.	0.814
BnaA01g17670D	BnaA09g39760D	A0A078H3Y1	A0A078FAH6	BnaA01g17670D protein.	BnaA04g27270D protein.	0.814
BnaA01g17670D	BnaC03g72450D	A0A078H3Y1	A0A078D4W1	BnaA01g17670D protein.	BnaC03g72450D protein.	0.814
BnaA01g17670D	BnaCnng30170D	A0A078H3Y1	A0A078J066	BnaA01g17670D protein.	BnaCnng30170D protein.	0.814
BnaA01g17680D	BnaA03g52280D	A0A078H341	A0A078FGD1	BnaA01g17680D protein.	BnaA03g52280D protein.	0.804
BnaA01g17680D	BnaA07g09990D	A0A078H341	A0A078GMF0	BnaA01g17680D protein.	BnaA07g09990D protein.	0.814
BnaA01g17680D	BnaA08g20480D	A0A078H341	A0A078HUN2	BnaA01g17680D protein.	BnaA08g20480D protein.	0.814
BnaA01g17680D	BnaA09g39760D	A0A078H341	A0A078FAH6	BnaA01g17680D protein.	BnaA04g27270D protein.	0.814
BnaA01g17680D	BnaC03g72450D	A0A078H341	A0A078D4W1	BnaA01g17680D protein.	BnaC03g72450D protein.	0.814
BnaA01g17680D	BnaCnng30170D	A0A078H341	A0A078J066	BnaA01g17680D protein.	BnaCnng30170D protein.	0.814
BnaA02g32850D	BnaA03g52280D	A0A078IAT9	A0A078FGD1	BnaA02g32850D protein.	BnaA03g52280D protein.	0.975
BnaA02g32850D	BnaA07g09990D	A0A078IAT9	A0A078GMF0	BnaA02g32850D protein.	BnaA07g09990D protein.	0.869
BnaA02g32850D	BnaA07g38320D	A0A078IAT9	A0A078IZ76	BnaA02g32850D protein.	BnaA07g38320D protein.	0.400
BnaA02g32850D	BnaA08g03020D	A0A078IAT9	A0A078FPQ3	BnaA02g32850D protein.	BnaA08g03020D protein.	0.400
BnaA02g32850D	BnaA08g20480D	A0A078IAT9	A0A078HUN2	BnaA02g32850D protein.	BnaA08g20480D protein.	0.869
BnaA02g32850D	BnaA09g05250D	A0A078IAT9	A0A078DFR1	BnaA02g32850D protein.	BnaA09g05250D protein.	0.900
BnaA02g32850D	BnaA09g39760D	A0A078IAT9	A0A078FAH6	BnaA02g32850D protein.	BnaA04g27270D protein.	0.869
BnaA02g32850D	BnaC02g41600D	A0A078IAT9	A0A078HSS5	BnaA02g32850D protein.	BnaC02g41600D protein.	0.900