19 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA01g13680D	BnaA01g13680D protein. (162 aa)
	BnaC03g72450D	BnaC03g72450D protein. (157 aa)
	BnaA03g17640D	BnaA03g17640D protein. (435 aa)
	BnaC03g47530D	BnaC03g47530D protein. (135 aa)
	BnaA05g28300D	BnaA05g28300D protein. (481 aa)
	BnaA03g00360D	BnaA03g00360D protein. (444 aa)
	BnaA09g39760D	BnaA04g27270D protein. (157 aa)
	BnaA03g46520D	BnaA03g46520D protein. (196 aa)
	BnaA09g42870D	BnaA09g42870D protein. (262 aa)
	BnaA09g42880D	BnaA09g42880D protein. (264 aa)
	BnaC03g21130D	BnaC03g21130D protein. (415 aa)
	BnaA07g02500D	BnaA07g02500D protein. (149 aa)
	BnaA07g09990D	BnaA07g09990D protein. (156 aa)
	BnaA08g20480D	BnaA08g20480D protein. (87 aa)
	BnaA01g31600D	BnaA01g31600D protein. (487 aa)
	BnaC09g50620D	BnaC09g50620D protein. (489 aa)
	BnaCnng30170D	BnaCnng30170D protein. (304 aa)
	BnaAnng26810D	BnaAnng26810D protein. (462 aa)
	BnaCnng60830D	BnaCnng60830D protein. (149 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA03g17640D	BnaA03g46520D	A0A078F3U1	A0A078FFZ6	BnaA03g17640D protein.	BnaA03g46520D protein.	0.490
BnaA03g46520D	BnaA03g17640D	A0A078FFZ6	A0A078F3U1	BnaA03g46520D protein.	BnaA03g17640D protein.	0.490
BnaA07g09990D	BnaA09g39760D	A0A078GMF0	A0A078FAH6	BnaA07g09990D protein.	BnaA04g27270D protein.	0.900
BnaA07g09990D	BnaC03g72450D	A0A078GMF0	A0A078D4W1	BnaA07g09990D protein.	BnaC03g72450D protein.	0.900
BnaA09g39760D	BnaA07g09990D	A0A078FAH6	A0A078GMF0	BnaA04g27270D protein.	BnaA07g09990D protein.	0.900
BnaA09g39760D	BnaC03g72450D	A0A078FAH6	A0A078D4W1	BnaA04g27270D protein.	BnaC03g72450D protein.	0.900
BnaA09g42870D	BnaA09g42880D	A0A078FH76	A0A078FKV4	BnaA09g42870D protein.	BnaA09g42880D protein.	0.544
BnaA09g42880D	BnaA09g42870D	A0A078FKV4	A0A078FH76	BnaA09g42880D protein.	BnaA09g42870D protein.	0.544
BnaC03g72450D	BnaA07g09990D	A0A078D4W1	A0A078GMF0	BnaC03g72450D protein.	BnaA07g09990D protein.	0.900
BnaC03g72450D	BnaA09g39760D	A0A078D4W1	A0A078FAH6	BnaC03g72450D protein.	BnaA04g27270D protein.	0.900