45 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC07g33560D	BnaC07g33560D protein. (259 aa)
	BnaC05g23530D	BnaC05g23530D protein. (556 aa)
	BnaC01g14460D	BnaC01g14460D protein. (641 aa)
	BnaA05g12180D	BnaA05g12180D protein. (388 aa)
	BnaC09g23710D	BnaC09g23710D protein. (641 aa)
	BnaC06g24150D	BnaC06g24150D protein. (134 aa)
	BnaC08g08420D	BnaC08g08420D protein. (102 aa)
	BnaA04g11760D	BnaA04g11760D protein. (110 aa)
	BnaA08g27810D	BnaA08g27810D protein. (160 aa)
	BnaC09g21030D	BnaC09g21030D protein. (169 aa)
	BnaC05g02400D	BnaC05g02400D protein. (154 aa)
	BnaA01g28160D	BnaA01g28160D protein. (158 aa)
	BnaA09g02930D	BnaA09g02930D protein. (428 aa)
	BnaA09g44990D	BnaA09g44990D protein. (112 aa)
	BnaA05g17470D	BnaA05g17470D protein. (155 aa)
	BnaC03g16690D	BnaC03g16690D protein. (367 aa)
	BnaA05g30630D	BnaA05g30630D protein. (820 aa)
	BnaA06g11730D	BnaA06g11730D protein. (114 aa)
	BnaA04g17370D	BnaA04g17370D protein. (367 aa)
	BnaC01g35420D	BnaC01g35420D protein. (158 aa)
	BnaA06g13700D	BnaA06g13700D protein. (462 aa)
	BnaA04g17790D	BnaA04g17790D protein. (474 aa)
	BnaA02g28740D	BnaA02g28740D protein. (154 aa)
	BnaA01g32590D	BnaA01g32590D protein. (128 aa)
	BnaC05g15020D	BnaC05g15020D protein. (459 aa)
	BnaA01g12730D	BnaA01g12730D protein. (618 aa)
	BnaA08g03370D	BnaA08g03370D protein. (155 aa)
	BnaC06g01920D	BnaC06g01920D protein. (217 aa)
	BnaA05g12430D	BnaA05g12430D protein. (159 aa)
	BnaC09g14630D	BnaC09g14630D protein; Belongs to the enoyl-CoA hydratase/isomerase family. (330 aa)
	BnaC04g24740D	BnaC04g24740D protein. (139 aa)
	BnaCnng16100D	BnaCnng16100D protein. (154 aa)
	BnaA02g16060D	BnaA02g16060D protein. (119 aa)
	BnaA09g14100D	BnaA09g14100D protein; Belongs to the enoyl-CoA hydratase/isomerase family. (338 aa)
	BnaC04g54400D	BnaC04g54400D protein. (159 aa)
	BnaAnng14470D	BnaAnng14470D protein. (177 aa)
	BnaC07g48460D	BnaC07g48460D protein. (150 aa)
	BnaC07g48470D	BnaC07g48470D protein. (67 aa)
	BnaC07g48450D	BnaC07g48450D protein. (73 aa)
	BnaA08g30500D	BnaA08g30500D protein. (63 aa)
	BnaAnng24370D	BnaAnng24370D protein. (98 aa)
	BnaCnng69840D	BnaCnng69840D protein. (475 aa)
	BnaAnng29560D	BnaAnng29560D protein. (250 aa)
	BnaAnng35480D	BnaAnng35480D protein. (58 aa)
	BnaAnng37790D	BnaAnng37790D protein. (249 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g28160D	BnaA04g17370D	A0A078G481	A0A078GT97	BnaA01g28160D protein.	BnaA04g17370D protein.	0.514
BnaA01g28160D	BnaA05g12180D	A0A078G481	A0A078FF50	BnaA01g28160D protein.	BnaA05g12180D protein.	0.514
BnaA01g28160D	BnaC03g16690D	A0A078G481	A0A078GFX0	BnaA01g28160D protein.	BnaC03g16690D protein.	0.514
BnaA01g32590D	BnaA02g16060D	A0A078HDM5	A0A078IIV5	BnaA01g32590D protein.	BnaA02g16060D protein.	0.680
BnaA01g32590D	BnaA04g11760D	A0A078HDM5	A0A078FNB6	BnaA01g32590D protein.	BnaA04g11760D protein.	0.777
BnaA01g32590D	BnaA06g11730D	A0A078HDM5	A0A078GLX5	BnaA01g32590D protein.	BnaA06g11730D protein.	0.680
BnaA01g32590D	BnaA08g30500D	A0A078HDM5	A0A078JD38	BnaA01g32590D protein.	BnaA08g30500D protein.	0.557
BnaA01g32590D	BnaA09g14100D	A0A078HDM5	A0A078IPS4	BnaA01g32590D protein.	BnaA09g14100D protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.557
BnaA01g32590D	BnaA09g44990D	A0A078HDM5	A0A078GAK9	BnaA01g32590D protein.	BnaA09g44990D protein.	0.680
BnaA01g32590D	BnaC04g24740D	A0A078HDM5	A0A078IDE3	BnaA01g32590D protein.	BnaC04g24740D protein.	0.557
BnaA01g32590D	BnaC06g24150D	A0A078HDM5	A0A078FGI3	BnaA01g32590D protein.	BnaC06g24150D protein.	0.680
BnaA01g32590D	BnaC07g33560D	A0A078HDM5	A0A078F5H8	BnaA01g32590D protein.	BnaC07g33560D protein.	0.690
BnaA01g32590D	BnaC09g14630D	A0A078HDM5	A0A078ICZ4	BnaA01g32590D protein.	BnaC09g14630D protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.557
BnaA02g16060D	BnaA01g32590D	A0A078IIV5	A0A078HDM5	BnaA02g16060D protein.	BnaA01g32590D protein.	0.680
BnaA02g16060D	BnaA04g17370D	A0A078IIV5	A0A078GT97	BnaA02g16060D protein.	BnaA04g17370D protein.	0.409
BnaA02g16060D	BnaA04g17790D	A0A078IIV5	A0A078GYI4	BnaA02g16060D protein.	BnaA04g17790D protein.	0.718
BnaA02g16060D	BnaA05g12180D	A0A078IIV5	A0A078FF50	BnaA02g16060D protein.	BnaA05g12180D protein.	0.409
BnaA02g16060D	BnaA05g30630D	A0A078IIV5	A0A078GH93	BnaA02g16060D protein.	BnaA05g30630D protein.	0.680
BnaA02g16060D	BnaA08g30500D	A0A078IIV5	A0A078JD38	BnaA02g16060D protein.	BnaA08g30500D protein.	0.734
BnaA02g16060D	BnaA09g02930D	A0A078IIV5	A0A078G5I7	BnaA02g16060D protein.	BnaA09g02930D protein.	0.718