29 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaA05g29660D	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1606 aa)
	BnaC09g36320D	AP-2 complex subunit alpha; Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. (1008 aa)
	BnaC05g43990D	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1600 aa)
	BnaAnng03410D	AP-2 complex subunit alpha; Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. (981 aa)
	BnaA06g10800D	BnaA06g10800D protein. (383 aa)
	BnaA09g18080D	BnaA09g18080D protein; Belongs to the adaptor complexes medium subunit family. (438 aa)
	BnaA01g31170D	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1680 aa)
	BnaA01g31010D	BnaA01g31010D protein. (253 aa)
	BnaA01g31000D	BnaA01g31000D protein. (736 aa)
	BnaA08g20480D	BnaA08g20480D protein. (87 aa)
	BnaA07g12500D	BnaA07g12500D protein. (69 aa)
	BnaA09g53440D	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (154 aa)
	BnaCnng30170D	BnaCnng30170D protein. (304 aa)
	BnaCnng40790D	BnaCnng40790D protein. (387 aa)
	BnaA06g40410D	BnaA06g40410D protein; Belongs to the adaptor complexes medium subunit family. (438 aa)
	BnaCnng41930D	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (145 aa)
	BnaA02g36830D	BnaA02g36830D protein; Belongs to the adaptor complexes medium subunit family. (115 aa)
	BnaA02g36610D	BnaA02g36610D protein; Belongs to the adaptor complexes medium subunit family. (265 aa)
	BnaC06g40760D	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (120 aa)
	BnaA09g39760D	BnaA04g27270D protein. (157 aa)
	BnaA05g27850D	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1545 aa)
	BnaC03g35690D	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1675 aa)
	BnaC03g72450D	BnaC03g72450D protein. (157 aa)
	BnaC01g23960D	BnaC01g23960D protein. (645 aa)
	BnaC01g23970D	BnaC01g23970D protein. (312 aa)
	BnaC01g39440D	BnaC01g39440D protein. (78 aa)
	BnaC01g39430D	BnaC01g39430D protein. (190 aa)
	BnaC01g24130D	BnaC01g24130D protein. (385 aa)
	BnaA07g09990D	BnaA07g09990D protein. (156 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g31000D	BnaA01g31010D	A0A078HHP7	A0A078HEW2	BnaA01g31000D protein.	BnaA01g31010D protein.	0.898
BnaA01g31000D	BnaA01g31170D	A0A078HHP7	A0A078HEV4	BnaA01g31000D protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.900
BnaA01g31000D	BnaA02g36610D	A0A078HHP7	A0A078JKC5	BnaA01g31000D protein.	BnaA02g36610D protein; Belongs to the adaptor complexes medium subunit family.	0.753
BnaA01g31000D	BnaA02g36830D	A0A078HHP7	A0A078JGL9	BnaA01g31000D protein.	BnaA02g36830D protein; Belongs to the adaptor complexes medium subunit family.	0.631
BnaA01g31000D	BnaA05g27850D	A0A078HHP7	A0A078F689	BnaA01g31000D protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.542
BnaA01g31000D	BnaA05g29660D	A0A078HHP7	A0A078HF00	BnaA01g31000D protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.543
BnaA01g31000D	BnaA06g40410D	A0A078HHP7	A0A078JBF3	BnaA01g31000D protein.	BnaA06g40410D protein; Belongs to the adaptor complexes medium subunit family.	0.753
BnaA01g31000D	BnaA07g09990D	A0A078HHP7	A0A078GMF0	BnaA01g31000D protein.	BnaA07g09990D protein.	0.450
BnaA01g31000D	BnaA07g12500D	A0A078HHP7	A0A078I2Z3	BnaA01g31000D protein.	BnaA07g12500D protein.	0.631
BnaA01g31000D	BnaA08g20480D	A0A078HHP7	A0A078HUN2	BnaA01g31000D protein.	BnaA08g20480D protein.	0.450
BnaA01g31000D	BnaA09g18080D	A0A078HHP7	A0A078HBN8	BnaA01g31000D protein.	BnaA09g18080D protein; Belongs to the adaptor complexes medium subunit family.	0.753
BnaA01g31000D	BnaA09g39760D	A0A078HHP7	A0A078FAH6	BnaA01g31000D protein.	BnaA04g27270D protein.	0.450
BnaA01g31000D	BnaA09g53440D	A0A078HHP7	A0A078IQA4	BnaA01g31000D protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.808
BnaA01g31000D	BnaAnng03410D	A0A078HHP7	A0A078GX31	BnaA01g31000D protein.	AP-2 complex subunit alpha; Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome.	0.879
BnaA01g31000D	BnaC01g23960D	A0A078HHP7	A0A078G4M9	BnaA01g31000D protein.	BnaC01g23960D protein.	0.879
BnaA01g31000D	BnaC01g23970D	A0A078HHP7	A0A078G6S5	BnaA01g31000D protein.	BnaC01g23970D protein.	0.879
BnaA01g31000D	BnaC01g24130D	A0A078HHP7	A0A078GGG1	BnaA01g31000D protein.	BnaC01g24130D protein.	0.631
BnaA01g31000D	BnaC01g39430D	A0A078HHP7	A0A078GBU1	BnaA01g31000D protein.	BnaC01g39430D protein.	0.480
BnaA01g31000D	BnaC03g35690D	A0A078HHP7	A0A078F4J2	BnaA01g31000D protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.907
BnaA01g31000D	BnaC03g72450D	A0A078HHP7	A0A078D4W1	BnaA01g31000D protein.	BnaC03g72450D protein.	0.450