38 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC05g49430D	Fumarylacetoacetase. (421 aa)
	BnaCnng63960D	BnaCnng63960D protein. (456 aa)
	BnaAnng31450D	BnaAnng31450D protein. (423 aa)
	BnaAnng37410D	BnaAnng37410D protein. (271 aa)
	BnaAnng37050D	BnaAnng37050D protein. (178 aa)
	BnaAnng41180D	BnaAnng41180D protein. (145 aa)
	BnaA03g46090D	BnaA03g46090D protein. (386 aa)
	BnaA02g26370D	BnaA02g26370D protein; Belongs to the GST superfamily. (229 aa)
	BnaAnng35150D	BnaAnng35150D protein. (178 aa)
	BnaC01g15060D	BnaC01g15060D protein. (424 aa)
	BnaA03g46060D	BnaA03g46060D protein. (412 aa)
	BnaA03g46070D	BnaA03g46070D protein. (423 aa)
	BnaA09g43670D	BnaA09g43670D protein. (423 aa)
	BnaC02g34440D	BnaC02g34440D protein; Belongs to the GST superfamily. (228 aa)
	BnaA10g07180D	BnaA10g07180D protein. (216 aa)
	BnaA06g34160D	BnaA06g34160D protein; Belongs to the GST superfamily. (213 aa)
	BnaA02g09960D	BnaA02g09960D protein. (418 aa)
	BnaA02g09890D	BnaA02g09890D protein. (452 aa)
	BnaA03g49250D	BnaA03g49250D protein. (448 aa)
	BnaA07g00460D	BnaA07g00460D protein. (453 aa)
	BnaA09g41170D	BnaA09g41170D protein. (464 aa)
	BnaA01g08470D	BnaA01g08470D protein. (456 aa)
	BnaC01g10040D	BnaC01g10040D protein. (382 aa)
	BnaA05g12790D	BnaA05g12790D protein. (420 aa)
	BnaC03g26850D	BnaC03g26850D protein. (439 aa)
	BnaC01g10020D	BnaC01g10020D protein. (456 aa)
	BnaC03g65220D	BnaC03g65220D protein. (247 aa)
	BnaC02g13840D	BnaC02g13840D protein. (458 aa)
	BnaC03g65240D	BnaC03g65240D protein. (114 aa)
	BnaC03g65230D	BnaC03g65230D protein. (174 aa)
	BnaA01g13280D	BnaA01g13280D protein. (424 aa)
	BnaA01g13270D	BnaA01g13270D protein. (424 aa)
	BnaCnng14590D	BnaCnng14590D protein. (244 aa)
	BnaC09g20710D	BnaC09g20710D protein; Belongs to the GST superfamily. (231 aa)
	BnaA09g10030D	BnaA09g10030D protein. (446 aa)
	BnaA06g38260D	Fumarylacetoacetase. (421 aa)
	BnaC06g41900D	Fumarylacetoacetase. (176 aa)
	BnaCnng43090D	BnaCnng43090D protein. (402 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g08470D	BnaA01g13270D	A0A078HCH7	A0A078I3H1	BnaA01g08470D protein.	BnaA01g13270D protein.	0.612
BnaA01g08470D	BnaA02g09890D	A0A078HCH7	A0A078GUN9	BnaA01g08470D protein.	BnaA02g09890D protein.	0.424
BnaA01g08470D	BnaA02g09960D	A0A078HCH7	A0A078GUH3	BnaA01g08470D protein.	BnaA02g09960D protein.	0.613
BnaA01g08470D	BnaA03g49250D	A0A078HCH7	A0A078GXQ6	BnaA01g08470D protein.	BnaA03g49250D protein.	0.607
BnaA01g08470D	BnaA05g12790D	A0A078HCH7	A0A078HJC8	BnaA01g08470D protein.	BnaA05g12790D protein.	0.612
BnaA01g08470D	BnaA09g41170D	A0A078HCH7	A0A078H8A9	BnaA01g08470D protein.	BnaA09g41170D protein.	0.610
BnaA01g08470D	BnaA09g43670D	A0A078HCH7	A0A078FHF5	BnaA01g08470D protein.	BnaA09g43670D protein.	0.612
BnaA01g08470D	BnaA10g07180D	A0A078HCH7	A0A078FN65	BnaA01g08470D protein.	BnaA10g07180D protein.	0.424
BnaA01g08470D	BnaC02g13840D	A0A078HCH7	A0A078HVB1	BnaA01g08470D protein.	BnaC02g13840D protein.	0.424
BnaA01g08470D	BnaC03g26850D	A0A078HCH7	A0A078HKZ8	BnaA01g08470D protein.	BnaC03g26850D protein.	0.609
BnaA01g08470D	BnaCnng14590D	A0A078HCH7	A0A078I7B1	BnaA01g08470D protein.	BnaCnng14590D protein.	0.424
BnaA01g13270D	BnaA01g08470D	A0A078I3H1	A0A078HCH7	BnaA01g13270D protein.	BnaA01g08470D protein.	0.612
BnaA01g13270D	BnaA02g09890D	A0A078I3H1	A0A078GUN9	BnaA01g13270D protein.	BnaA02g09890D protein.	0.424
BnaA01g13270D	BnaA02g09960D	A0A078I3H1	A0A078GUH3	BnaA01g13270D protein.	BnaA02g09960D protein.	0.617
BnaA01g13270D	BnaA03g49250D	A0A078I3H1	A0A078GXQ6	BnaA01g13270D protein.	BnaA03g49250D protein.	0.612
BnaA01g13270D	BnaA05g12790D	A0A078I3H1	A0A078HJC8	BnaA01g13270D protein.	BnaA05g12790D protein.	0.620
BnaA01g13270D	BnaA09g41170D	A0A078I3H1	A0A078H8A9	BnaA01g13270D protein.	BnaA09g41170D protein.	0.615
BnaA01g13270D	BnaA09g43670D	A0A078I3H1	A0A078FHF5	BnaA01g13270D protein.	BnaA09g43670D protein.	0.620
BnaA01g13270D	BnaA10g07180D	A0A078I3H1	A0A078FN65	BnaA01g13270D protein.	BnaA10g07180D protein.	0.424
BnaA01g13270D	BnaC02g13840D	A0A078I3H1	A0A078HVB1	BnaA01g13270D protein.	BnaC02g13840D protein.	0.424