27 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaC03g72450D	BnaC03g72450D protein. (157 aa)
	BnaA09g39760D	BnaA04g27270D protein. (157 aa)
	BnaA09g20630D	BnaA09g20630D protein. (193 aa)
	BnaC05g03030D	BnaC05g03030D protein. (215 aa)
	BnaA05g10690D	BnaA05g10690D protein. (258 aa)
	BnaA10g09660D	BnaA10g09660D protein. (1233 aa)
	BnaC04g11740D	BnaC04g11740D protein. (258 aa)
	BnaA04g19120D	BnaA04g19120D protein. (252 aa)
	BnaC08g14320D	BnaC08g14320D protein. (597 aa)
	BnaA08g25710D	BnaA08g25710D protein. (602 aa)
	BnaC04g43450D	BnaC04g43450D protein. (253 aa)
	BnaA07g09990D	BnaA07g09990D protein. (156 aa)
	BnaCnng05950D	BnaCnng05950D protein. (203 aa)
	BnaA08g04820D	BnaA08g04820D protein. (219 aa)
	BnaC02g06640D	BnaC02g06640D protein. (239 aa)
	BnaA04g07250D	BnaA04g07250D protein. (219 aa)
	BnaA08g20480D	BnaA08g20480D protein. (87 aa)
	BnaC09g32060D	BnaC09g32060D protein. (1238 aa)
	BnaC09g52050D	BnaC09g52050D protein. (133 aa)
	BnaA05g33340D	BnaA05g33340D protein. (199 aa)
	BnaAnng12750D	BnaAnng12750D protein. (206 aa)
	BnaAnng12460D	BnaAnng12460D protein. (215 aa)
	BnaCnng30170D	BnaCnng30170D protein. (304 aa)
	BnaCnng28070D	BnaCnng28070D protein. (597 aa)
	BnaC09g41450D	BnaC09g41450D protein. (207 aa)
	BnaCnng56880D	BnaCnng56880D protein. (202 aa)
	BnaC04g55930D	BnaC04g55930D protein. (219 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA04g07250D	BnaA08g04820D	A0A078HMF9	A0A078HA57	BnaA04g07250D protein.	BnaA08g04820D protein.	0.900
BnaA04g07250D	BnaC04g55930D	A0A078HMF9	A0A078JSD2	BnaA04g07250D protein.	BnaC04g55930D protein.	0.900
BnaA07g09990D	BnaA08g25710D	A0A078GMF0	A0A078G697	BnaA07g09990D protein.	BnaA08g25710D protein.	0.563
BnaA07g09990D	BnaA09g39760D	A0A078GMF0	A0A078FAH6	BnaA07g09990D protein.	BnaA04g27270D protein.	0.900
BnaA07g09990D	BnaA10g09660D	A0A078GMF0	A0A078FX72	BnaA07g09990D protein.	BnaA10g09660D protein.	0.563
BnaA07g09990D	BnaC03g72450D	A0A078GMF0	A0A078D4W1	BnaA07g09990D protein.	BnaC03g72450D protein.	0.900
BnaA07g09990D	BnaC08g14320D	A0A078GMF0	A0A078G5A5	BnaA07g09990D protein.	BnaC08g14320D protein.	0.563
BnaA07g09990D	BnaC09g32060D	A0A078GMF0	A0A078I8D8	BnaA07g09990D protein.	BnaC09g32060D protein.	0.563
BnaA07g09990D	BnaCnng28070D	A0A078GMF0	A0A078J082	BnaA07g09990D protein.	BnaCnng28070D protein.	0.563
BnaA08g04820D	BnaA04g07250D	A0A078HA57	A0A078HMF9	BnaA08g04820D protein.	BnaA04g07250D protein.	0.900
BnaA08g04820D	BnaC04g55930D	A0A078HA57	A0A078JSD2	BnaA08g04820D protein.	BnaC04g55930D protein.	0.900
BnaA08g20480D	BnaA08g25710D	A0A078HUN2	A0A078G697	BnaA08g20480D protein.	BnaA08g25710D protein.	0.563
BnaA08g20480D	BnaA10g09660D	A0A078HUN2	A0A078FX72	BnaA08g20480D protein.	BnaA10g09660D protein.	0.563
BnaA08g20480D	BnaC08g14320D	A0A078HUN2	A0A078G5A5	BnaA08g20480D protein.	BnaC08g14320D protein.	0.563
BnaA08g20480D	BnaC09g32060D	A0A078HUN2	A0A078I8D8	BnaA08g20480D protein.	BnaC09g32060D protein.	0.563
BnaA08g20480D	BnaCnng28070D	A0A078HUN2	A0A078J082	BnaA08g20480D protein.	BnaCnng28070D protein.	0.563
BnaA08g25710D	BnaA07g09990D	A0A078G697	A0A078GMF0	BnaA08g25710D protein.	BnaA07g09990D protein.	0.563
BnaA08g25710D	BnaA08g20480D	A0A078G697	A0A078HUN2	BnaA08g25710D protein.	BnaA08g20480D protein.	0.563
BnaA08g25710D	BnaA09g39760D	A0A078G697	A0A078FAH6	BnaA08g25710D protein.	BnaA04g27270D protein.	0.563
BnaA08g25710D	BnaC03g72450D	A0A078G697	A0A078D4W1	BnaA08g25710D protein.	BnaC03g72450D protein.	0.563