40 items (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BnaCnng25840D	Thioredoxin; Belongs to the thioredoxin family. (117 aa)
	BnaA06g13900D	Thioredoxin; Belongs to the thioredoxin family. (119 aa)
	BnaC09g15050D	Thioredoxin; Belongs to the thioredoxin family. (128 aa)
	BnaA08g26140D	BnaA08g26140D protein. (557 aa)
	BnaA09g16230D	Thioredoxin; Belongs to the thioredoxin family. (123 aa)
	BnaC04g29670D	Glutamine synthetase. (489 aa)
	BnaA05g29640D	BnaA05g29640D protein. (560 aa)
	BnaA05g29510D	Thioredoxin; Belongs to the thioredoxin family. (140 aa)
	BnaA08g04320D	Thioredoxin; Belongs to the thioredoxin family. (118 aa)
	BnaC02g06690D	Glutamine synthetase. (356 aa)
	BnaC05g15320D	Thioredoxin; Belongs to the thioredoxin family. (119 aa)
	BnaC08g26550D	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family. (727 aa)
	BnaC09g17310D	Thioredoxin; Belongs to the thioredoxin family. (123 aa)
	BnaA09g14480D	Thioredoxin; Belongs to the thioredoxin family. (128 aa)
	BnaA08g29950D	Glutamine synthetase. (394 aa)
	BnaC09g41340D	Glutamine synthetase. (356 aa)
	BnaC06g02010D	Glutamine synthetase. (357 aa)
	BnaC08g49310D	BnaC08g49310D protein. (380 aa)
	BnaC03g72600D	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family. (715 aa)
	BnaCnng46660D	Thioredoxin; Belongs to the thioredoxin family. (133 aa)
	BnaC04g55570D	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family. (726 aa)
	BnaCnng52250D	Phenylalanine ammonia-lyase. (519 aa)
	BnaCnng57900D	Glutamine synthetase. (354 aa)
	gln	Glutamine synthetase. (356 aa)
	gln-2	Glutamine synthetase. (356 aa)
	BnaA09g35230D	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family. (727 aa)
	BnaA03g18760D	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family. (715 aa)
	BnaA05g28470D	Phenylalanine ammonia-lyase. (706 aa)
	BnaA09g43000D	BnaA09g43000D protein. (382 aa)
	BnaA10g09070D	Thioredoxin; Belongs to the thioredoxin family. (115 aa)
	BnaA04g11940D	Phenylalanine ammonia-lyase. (698 aa)
	BnaA04g21230D	BnaA04g21230D protein; Belongs to the PAL/histidase family. (423 aa)
	BnaC04g05620D	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family. (717 aa)
	BnaC08g13860D	BnaC08g13860D protein. (557 aa)
	BnaA06g20780D	BnaA06g20780D protein; Belongs to the aldehyde dehydrogenase family. (503 aa)
	BnaC06g25120D	Thioredoxin; Belongs to the thioredoxin family. (140 aa)
	BnaC04g18700D	Thioredoxin; Belongs to the thioredoxin family. (128 aa)
	BnaC05g43970D	BnaC05g43970D protein. (560 aa)
	BnaA05g17940D	BnaA05g17940D protein. (253 aa)
	BnaC07g32020D	Thioredoxin; Belongs to the thioredoxin family. (114 aa)

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA03g18760D	BnaA06g20780D	A0A078EZV7	A0A078G8T8	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	BnaA06g20780D protein; Belongs to the aldehyde dehydrogenase family.	0.799
BnaA03g18760D	BnaA08g29950D	A0A078EZV7	A0A078IEQ7	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Glutamine synthetase.	0.656
BnaA03g18760D	BnaA09g35230D	A0A078EZV7	Q9AXN3	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.999
BnaA03g18760D	BnaC02g06690D	A0A078EZV7	A0A078HLB2	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Glutamine synthetase.	0.856
BnaA03g18760D	BnaC03g72600D	A0A078EZV7	A0A078JC38	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.999
BnaA03g18760D	BnaC04g05620D	A0A078EZV7	A0A078G6B4	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.999
BnaA03g18760D	BnaC04g29670D	A0A078EZV7	A0A078H865	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Glutamine synthetase.	0.856
BnaA03g18760D	BnaC04g55570D	A0A078EZV7	A0A078JDW4	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.999
BnaA03g18760D	BnaC06g02010D	A0A078EZV7	A0A078IIA5	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Glutamine synthetase.	0.856
BnaA03g18760D	BnaC08g26550D	A0A078EZV7	A0A078HWQ9	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.999
BnaA03g18760D	BnaC09g41340D	A0A078EZV7	A0A078II53	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Glutamine synthetase.	0.856
BnaA03g18760D	BnaCnng57900D	A0A078EZV7	A0A078JMZ9	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Glutamine synthetase.	0.856
BnaA03g18760D	gln	A0A078EZV7	O04852	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Glutamine synthetase.	0.856
BnaA03g18760D	gln-2	A0A078EZV7	Q42625	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Glutamine synthetase.	0.655
BnaA04g11940D	BnaA05g17940D	A0A078FSS8	A0A078GQJ2	Phenylalanine ammonia-lyase.	BnaA05g17940D protein.	0.457
BnaA04g11940D	BnaA08g29950D	A0A078FSS8	A0A078IEQ7	Phenylalanine ammonia-lyase.	Glutamine synthetase.	0.403
BnaA04g11940D	BnaC02g06690D	A0A078FSS8	A0A078HLB2	Phenylalanine ammonia-lyase.	Glutamine synthetase.	0.403
BnaA04g11940D	BnaC04g29670D	A0A078FSS8	A0A078H865	Phenylalanine ammonia-lyase.	Glutamine synthetase.	0.403
BnaA04g11940D	BnaC06g02010D	A0A078FSS8	A0A078IIA5	Phenylalanine ammonia-lyase.	Glutamine synthetase.	0.416
BnaA04g11940D	BnaC09g41340D	A0A078FSS8	A0A078II53	Phenylalanine ammonia-lyase.	Glutamine synthetase.	0.403